Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25]
2,004 sequences; 2,789,656,328 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 1e-19
seq247 107 2e-18
seq223 107 2e-18
seq253 100 3e-16
seq98 91.5 1e-13
seq11 91.5 1e-13
seq68 87.8 2e-12
seq422 86.0 6e-12
seq373 82.4 7e-11
>seq1
Length=126035930
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| |||||||| || ||||| || || || ||||| || || || ||
Sbjct 62620371 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 62620430
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| |||
Sbjct 62620431 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 62620490
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| || || || ||||| ||||| ||
Sbjct 62620491 CCTGTTTCTGTTTGAGACTCAATGATGGC 62620519
>seq247
Length=91754291
Score = 107 bits (118), Expect = 2e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || ||||| || || |||||||| |||||| |||| || || |
Sbjct 30514847 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGC 30514788
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| |||| | || | |||||| | ||| |||||||| || | || || |
Sbjct 30514787 CCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 30514728
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
||||||||||||| ||||| || ||||||||| ||||||| ||| | || |
Sbjct 30514727 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 30514668
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
| ||||| || ||||| || || || || |||||
Sbjct 30514667 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 30514634
>seq223
Length=128539186
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || |
Sbjct 120278156 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 120278097
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||||||||||||| | || || |||||
Sbjct 120278096 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 120278038
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||| | | || || ||||| |||||| ||||||| | | | || || || || |
Sbjct 120278037 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 120277979
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||| || ||||| || ||||| || |||| || | ||||||| |||
Sbjct 120277978 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 120277929
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||||||||| ||||| || |||||| | || ||||| ||
Sbjct 120278612 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 120278553
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||||| ||||| || ||| | ||||||||||||| | || ||||||||
Sbjct 120278552 GACACCATCGAAAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACCA 120278494
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || || || || || ||| |||||||
Sbjct 120278493 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGA 120278458
>seq253
Length=75148670
Score = 100 bits (110), Expect = 3e-16
Identities = 164/235 (70%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || ||
Sbjct 15288273 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 15288215
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| |||||| || || | ||| ||| ||||||||| | || |||
Sbjct 15288214 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 15288155
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||| | || || || || ||||| ||| ||||||| ||| | ||
Sbjct 15288154 GACCAGCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 15288095
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || ||||| || || |||| || | ||||| || ||||
Sbjct 15288094 TACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTGCGCCTGAGAGGTGGTA 15288040
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| || || || ||||| || || |||||| |||| ||||||||
Sbjct 9604449 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 9604508
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | ||| || || | || || |||||||| | || ||||
Sbjct 9604509 TCGGATACGATATAAAATGTAAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCCGGT 9604568
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || | || |||||||| || ||||||| | | | ||| ||| ||
Sbjct 9604569 CAGCAGAGACTGAACTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGAC----TA 9604623
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| ||||||||||| || ||||||||| | ||| | |||||
Sbjct 9604624 CAATATTCAAAAAGAGTCTACTCTTCATTTTGTATTGAGACT 9604665
>seq98
Length=135778131
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| || || || || || || || |||||| |||| | ||||||
Sbjct 2002565 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGGTGAACCC 2002624
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || ||
Sbjct 2002625 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2002684
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | | | ||| || || ||
Sbjct 2002685 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 2002743
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| |||||||| || || ||||||||||| || | |||||
Sbjct 2002744 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 2002785
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/160 (73%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || | ||| || | |||||||| |||||| | || || || |
Sbjct 37173734 CAAACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGC 37173793
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| |||| | || | |||||| | ||| |||||||| || | || || |
Sbjct 37173794 CCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 37173853
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||||||| ||||| || ||||||||| |||||||
Sbjct 37173854 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGA 37173893
>seq11
Length=90373283
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/220 (70%), Gaps = 15/220 (7%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| || || || ||||| || || |||||| | || |||||||| |
Sbjct 26593234 ATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTG 26593175
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310
||| |||| || || | |||| | ||| |||||||| | || || || |
Sbjct 26593174 AACACAACAGAAAATGTAAAG--GCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATC 26593117
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||| | || || || |||||||| || ||||||| || || ||||| |
Sbjct 26593116 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GATTACA 26593068
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||||| || || ||||||||||| || | |||||
Sbjct 26593067 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 26593028
>seq68
Length=92142175
Score = 87.8 bits (96), Expect = 2e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| || || || || || || | |||||| |||| ||||||||
Sbjct 7889634 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCC 7889693
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| | || || ||
Sbjct 7889694 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7889753
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | | | ||| | || ||
Sbjct 7889754 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTTTCTGACTA 7889812
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| |||||||| || || ||||||||||| || | |||||
Sbjct 7889813 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 7889854
>seq422
Length=24206276
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250
||||||| || | |||||||| || ||||| | ||| |||||| | || || | ||
Sbjct 21869590 ACATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCATCCCA 21869649
Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|||| |||| |||||| | || |||||||| ||| | || || ||||
Sbjct 21869650 GTGACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACC 21869709
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
|||||| ||| ||||| | |||||||||||||| || ||| | |||||||
Sbjct 21869710 AGCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATA 21869769
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
|||| || ||||| || || || || |||| |||
Sbjct 21869770 ACATCCAGAAAGAGTCCACCCTGCAGGTGGTGCTT 21869804
>seq373
Length=85787240
Score = 82.4 bits (90), Expect = 7e-11
Identities = 161/235 (69%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| | ||||| ||||| ||||| | ||| || |||||| | || || ||
Sbjct 11745605 TCAAA-ATGCAGGTCTTCGTGAAGACCCTGACTGACAAGACCATCACCCTTGATGTGGAG 11745663
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304
|| |||| |||||| || || | |||| | ||| ||||||||| | |
Sbjct 11745664 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCAGGATAAGGAAGGCATCTGCC 11745721
Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364
||||||||||| | || || || || |||| ||| ||||||| ||| | |
Sbjct 11745722 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTGGAAGATGGCCGCACTCTTTCTG 11745781
Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
| || ||||| || ||||||||||| || || ||||| | | ||||| || ||
Sbjct 11745782 ACTACAACATCCAGAAAGAATCGACCCTGCACCTGGTCCAGCGTCTGAGAGGTGG 11745836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445755233551680
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