Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq247 107 2e-18 seq223 107 2e-18 seq253 100 3e-16 seq98 91.5 1e-13 seq11 91.5 1e-13 seq68 87.8 2e-12 seq422 86.0 6e-12 seq373 82.4 7e-11 >seq1 Length=126035930 Score = 111 bits (122), Expect = 1e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || ||||| || || || ||||| || || || || Sbjct 62620371 ACCTCATCTTTGCTGGTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 62620430 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||| ||||| ||| Sbjct 62620431 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGGGGTG 62620490 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || || || || ||||| ||||| || Sbjct 62620491 CCTGTTTCTGTTTGAGACTCAATGATGGC 62620519 >seq247 Length=91754291 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| |||| || || | Sbjct 30514847 CAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGC 30514788 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 30514787 CCAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 30514728 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| ||||| || ||||||||| ||||||| ||| | || | Sbjct 30514727 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACT 30514668 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || ||||| || || || || ||||| Sbjct 30514667 ACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 30514634 >seq223 Length=128539186 Score = 107 bits (118), Expect = 2e-18 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| || |||||| |||| || || || | Sbjct 120278156 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGC 120278097 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 120278096 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCTCCTGACCA 120278038 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || ||||| |||||| ||||||| | | | || || || || | Sbjct 120278037 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 120277979 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || ||||| || |||| || | ||||||| ||| Sbjct 120277978 ACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 120277929 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || |||||| | || ||||| || Sbjct 120278612 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 120278553 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||||| ||||| || ||| | ||||||||||||| | || |||||||| Sbjct 120278552 GACACCATCGAAAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATTCCTCCCGACCA 120278494 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || || || || || ||| ||||||| Sbjct 120278493 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGA 120278458 >seq253 Length=75148670 Score = 100 bits (110), Expect = 3e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 15288273 TCAAA-ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 15288215 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||||| || || | ||| ||| ||||||||| | || ||| Sbjct 15288214 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 15288155 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | || Sbjct 15288154 GACCAGCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 15288095 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || ||||| || || |||| || | ||||| || |||| Sbjct 15288094 TACAACATCCAGAAGGAGTCGACCCTGCACTTGGTCCTGCGCCTGAGAGGTGGTA 15288040 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || ||||| || || |||||| |||| |||||||| Sbjct 9604449 AAAATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 9604508 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | ||| || || | || || |||||||| | || |||| Sbjct 9604509 TCGGATACGATATAAAATGTAAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCCGGT 9604568 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || | || |||||||| || ||||||| | | | ||| ||| || Sbjct 9604569 CAGCAGAGACTGAACTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGAC----TA 9604623 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || ||||||||| | ||| | ||||| Sbjct 9604624 CAATATTCAAAAAGAGTCTACTCTTCATTTTGTATTGAGACT 9604665 >seq98 Length=135778131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || || |||||| |||| | |||||| Sbjct 2002565 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGGTGAACCC 2002624 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 2002625 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2002684 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| || || || Sbjct 2002685 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTGTCTGACTA 2002743 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 2002744 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 2002785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || | ||| || | |||||||| |||||| | || || || | Sbjct 37173734 CAAACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGC 37173793 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | |||| | || | |||||| | ||| |||||||| || | || || | Sbjct 37173794 CCAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTG 37173853 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||||||| ||||| || ||||||||| ||||||| Sbjct 37173854 ACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGA 37173893 >seq11 Length=90373283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || || || ||||| || || |||||| | || |||||||| | Sbjct 26593234 ATGCAGATTTTCGTGAAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTG 26593175 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCCGACC 31310 ||| |||| || || | |||| | ||| |||||||| | || || || | Sbjct 26593174 AACACAACAGAAAATGTAAAG--GCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATC 26593117 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| | || || || |||||||| || ||||||| || || ||||| | Sbjct 26593116 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-----TGTCT------GATTACA 26593068 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||||||||| || | ||||| Sbjct 26593067 ACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 26593028 >seq68 Length=92142175 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || || || || || | |||||| |||| |||||||| Sbjct 7889634 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCC 7889693 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | |||| || || | || ||| |||||||| | || || || Sbjct 7889694 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7889753 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || |||||||| || ||||||| | | | ||| | || || Sbjct 7889754 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGACGTACTTTTTCTGACTA 7889812 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || |||||||| || || ||||||||||| || | ||||| Sbjct 7889813 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 7889854 >seq422 Length=24206276 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31191 ACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGT 31250 ||||||| || | |||||||| || ||||| | ||| |||||| | || || | || Sbjct 21869590 ACATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCATCCCA 21869649 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| |||||| | || |||||||| ||| | || || |||| Sbjct 21869650 GTGACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACC 21869709 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||| ||| ||||| | |||||||||||||| || ||| | ||||||| Sbjct 21869710 AGCAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATA 21869769 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||| || ||||| || || || || |||| ||| Sbjct 21869770 ACATCCAGAAAGAGTCCACCCTGCAGGTGGTGCTT 21869804 >seq373 Length=85787240 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| | ||||| ||||| ||||| | ||| || |||||| | || || || Sbjct 11745605 TCAAA-ATGCAGGTCTTCGTGAAGACCCTGACTGACAAGACCATCACCCTTGATGTGGAG 11745663 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGC--GGACAAGGAAGGCGTGCCGC 31304 || |||| |||||| || || | |||| | ||| ||||||||| | | Sbjct 11745664 CCCAGTGACACCATCGAAAATGTGAAG--GCCAATATCCAGGATAAGGAAGGCATCTGCC 11745721 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 ||||||||||| | || || || || |||| ||| ||||||| ||| | | Sbjct 11745722 CCGACCAGCAGAGGCTCATCTTTGCAGGCATGCAGCTGGAAGATGGCCGCACTCTTTCTG 11745781 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || ||||| || ||||||||||| || || ||||| | | ||||| || || Sbjct 11745782 ACTACAACATCCAGAAAGAATCGACCCTGCACCTGGTCCAGCGTCTGAGAGGTGG 11745836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755233551680