Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq423 293 3e-74 seq1 114 2e-20 seq240 111 2e-19 seq113 107 2e-18 seq223 100 4e-16 seq127 93.3 5e-14 >seq423 Length=130038232 Score = 293 bits (324), Expect = 3e-74 Identities = 633/939 (67%), Gaps = 27/939 (3%) Strand=Plus/Plus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAG---ACATAACTCCCATTT 33291 |||| |||||| |||| || | |||| ||| ||| | || ||| ||||| | Sbjct 41477740 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCAACACCACTCCTGTCC 41477799 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 | || || || | || | || || || || || || |||| | ||| ||||| | Sbjct 41477800 TCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCT 41477854 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTC-AGAAATC 33410 |||| || ||||| || || || || ||| || |||| |||| ||| || | | Sbjct 41477855 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATGC 41477914 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || |||| || || || || ||| ||| | | |||||||| || ||||| Sbjct 41477915 ---CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGC 41477971 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || || || | ||| |||| || || || ||||| || || ||||| | || | Sbjct 41477972 TTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCTT 41478031 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAA 33590 ||| | | || || ||| |||| | || || ||||||| || || ||| Sbjct 41478032 TCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAA 41478091 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 || ||||| | |||||| ||||| || || | ||| || ||||| ||||| || ||||| Sbjct 41478092 TCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 41478151 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 || || || || || ||||| ||||| || || || | || ||||||| | ||||| Sbjct 41478152 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGATG---CCTTCC 41478208 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTT 33767 ||||||||||| | | || | || ||||| | | | |||| ||||| | Sbjct 41478209 GCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCAGTGC 41478268 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 |||||||| ||||||||||| ||||||||||||||||| |||||||| ||| || | Sbjct 41478269 AAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAAT 41478328 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | |||| || |||||| | ||||| || | | | |||||||||| | ||||| Sbjct 41478329 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGT 41478388 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 |||||||| ||||| || || || || ||||||| | || || || | ||| |||||| Sbjct 41478389 ATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCT 41478448 Query 33948 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCC 34007 | |||||| || | || ||| |||| ||||| |||||||| || ||||| || || Sbjct 41478449 TGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACC 41478507 Query 34008 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----AT 34063 | ||||| |||||||| | | || || || | || ||||| || || || Sbjct 41478508 AGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCAAAT 41478563 Query 34064 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 34123 || || || | ||||| || || ||||| || || || || ||||| ||| |||| Sbjct 41478564 GTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACAT 41478623 Query 34124 ATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | |||||| ||||| || | | | ||||| || ||||| Sbjct 41478624 CTGCCAGATATCATGGTACTCGTTGGGGAAGATGACAAA 41478662 >seq1 Length=126035930 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 62611399 CTGTTTCTTATACCATA 62611415 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||||||||| | || |||||||| | | Sbjct 62622018 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 62622077 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 62622078 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 62622137 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 62622138 AGGCTCCAGGTAAATAGC 62622155 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || || ||||| || | || || || || | ||| || || || | || || | Sbjct 62616529 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 62616588 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||||| |||||| || ||| ||||| | || ||||| || | Sbjct 62616589 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 62616648 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || ||||| || || || | |||||||| ||||| || || || | ||| | Sbjct 62616649 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGAACCCCAATTCCAATGGGGCGATGAC 62616708 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 62616709 GTTTATTTGA 62616718 >seq240 Length=107702431 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || ||||| ||||| || ||||| || || || || | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||| Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 33724 C 33724 | Sbjct 97515105 C 97515105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 33844 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33903 |||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 33904 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 | || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 >seq113 Length=139301422 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 97069849 >seq223 Length=128539186 Score = 100 bits (110), Expect = 4e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| |||||||||||| |||||||||| ||||||| || | Sbjct 61833054 TCGGATCTCTGGGTTTGATTTTTGCATTGACTTTAAACAGACATAAGTATCCCCTTAACC 61832995 Query 188436 TGTACCTACTTTGTGGATTT 188455 |||||||||||| ||||||| Sbjct 61832994 TGTACCTACTTTTTGGATTT 61832975 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| ||| || | ||||||||||| |||||||| |||| ||| Sbjct 61826721 GTTACTTTCTATGATGTATATATTATTTTGCAAGCTTTCATACTGACTACTACAGTATTT 61826662 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTG 188600 ||| | ||||| | |||||||||||| ||||| |||||||| ||| ||| Sbjct 61826661 TTTGGTTTGACTGTGTATACTCTACAATCTAAGAGGGATTTCAGCAAATTTG 61826610 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||||||||||||||||| |||| ||||| || |||||||||||| Sbjct 61850604 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCAGCGTGGCCTCCGCCAGCGTGCAC 61850545 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 61850544 ATCCGAATGG 61850535 >seq127 Length=125710982 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTC--ATCCAAAGCTTGAACTTCT 85916330 Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416 || | |||||||||| | || |||| | || ||||| || |||| ||| || | || Sbjct 85916331 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 85916390 Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476 || | |||| | ||| ||| |||| || | || || | ||||| ||||||||| Sbjct 85916391 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 85916450 Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT 31505 || ||||| ||||| |||||| |||||| Sbjct 85916451 TCATCTATGACACCAGCTCCTACATCAAT 85916479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801823069120