Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq423 221 1e-52 seq113 114 1e-20 seq1 93.3 4e-14 >seq423 Length=130038232 Score = 221 bits (244), Expect = 1e-52 Identities = 508/755 (67%), Gaps = 30/755 (4%) Strand=Plus/Plus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTA 11387 ||| || || | ||||| || || |||| || | || || || || ||||| | | Sbjct 41477789 CACTCCTGTCCTCTGATACTCCCTTACTC-TCTTCTCAAAGAAGTTCGTCTTTC-----A 41477842 Query 11388 GTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTA 11447 |||| |||| |||||||||| ||| || || | ||| |||| || || | |||| | Sbjct 41477843 GTGAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCA 41477902 Query 11448 ACTCTGTTAATAAT--CTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATT 11505 || | || || |||| || || || || || || | ||| | ||||| Sbjct 41477903 GTTCC----AGCATGCCTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATT 41477958 Query 11506 CATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGC 11565 ||| || || || | ||| || | || | || | || |||| |||||| ||| || Sbjct 41477959 CATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGC 41478018 Query 11566 ATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 || || ||| | |||| |||| ||||| |||| | || || ||||| Sbjct 41478019 ATTGATAATTCTTTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACAT 41478078 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 | || ||||||||||| |||||||| || ||||| || || |||||||| |||||||| Sbjct 41478079 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGT 41478138 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | || ||||||| ||||||||| || | ||| ||||| | ||||| |||||||||| Sbjct 41478139 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAA 41478198 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACC----TTGTT 11799 | || || ||| | || ||||| |||| || | ||| ||||| || | |||| Sbjct 41478199 G---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTC 41478255 Query 11800 GCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTAT 11859 | | ||||| | ||||||||| || |||||||| || || ||| ||||| || Sbjct 41478256 CCCA---ATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAAT 41478312 Query 11860 AGCGTTAAA--TAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 || || || |||| | ||||| | |||| ||| || || || | | ||| Sbjct 41478313 GGCATTGAAGCGAAATTC--CCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAA 41478370 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||||||||| | ||||| || |||||||| || ||||| || ||| ||||||| || || Sbjct 41478371 CTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCT 41478430 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| ||| || || ||||| ||| | || || ||||||| || |||||| Sbjct 41478431 TCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCA 41478490 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 || | ||||| || | || | ||| |||||| Sbjct 41478491 CTTG-CGCAAAGAAAACCAGAACATGGGATATAAA 41478524 Score = 159 bits (176), Expect = 3e-34 Identities = 318/463 (69%), Gaps = 16/463 (3%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| | ||| |||||||| || || || || || |||||||| ||||||| | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || ||||||| |||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT--ATA----CCTTGTTGCTA 11803 | | ||||| ||||| ||| | || | |||||||| || | ||||| | | Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 ||||| | ||||| | || ||||| || || || ||||||||| || || Sbjct 119131709 ---ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCA 119131654 Query 11864 TT--AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTAT 11921 || | | |||| | ||||| | |||||| ||| || ||| || || | | ||||| Sbjct 119131653 TTGAAGAGAAATTC--CCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTAT 119131598 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || || ||||| || ||||| ||||| ||||| || |||||||| || | |||| Sbjct 119131597 TTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG 119131538 Query 11982 AACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | ||| | || | |||| |||| | | || |||| ||| || ||||||| | Sbjct 119131537 TAATCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATG 119131478 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTC 12084 |||||| || || || |||| |||||| ||| |||| || Sbjct 119131477 CTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTC 119131435 >seq113 Length=139301422 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 97069729 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97069788 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 97069789 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97069848 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 97069849 CCACCACTCTTTCCCC 97069864 >seq1 Length=126035930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 62611399 CTGTTTCTTATACCAT 62611414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513063453760