Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq423 262 5e-65 seq223 174 2e-38 seq1 114 2e-20 seq113 111 2e-19 seq240 100 4e-16 seq127 89.7 7e-13 >seq423 Length=130038232 Score = 262 bits (290), Expect = 5e-65 Identities = 423/603 (70%), Gaps = 15/603 (2%) Strand=Plus/Plus Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 || || ||||||| || || ||||| ||||||| |||||| ||||| || || | ||| Sbjct 41478068 TGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCA 41478127 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 |||||||| ||||| || ||||| || || || || || ||||| ||||| || ||||| Sbjct 41478128 TTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAA 41478187 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 36319 | |||||||||| | ||||| |||| |||||| | | || | || ||||| | Sbjct 41478188 TAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTA 41478244 Query 36320 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 36379 | | |||| ||||| | |||||||| ||||||||||| ||||||||||| Sbjct 41478245 GCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATC 41478304 Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439 || || || ||||| ||| || | | |||| || |||||| | || || ||| | Sbjct 41478305 GTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTA 41478364 Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499 | | |||||||||| | ||||| |||||||| ||||| ||||| || || ||||||| Sbjct 41478365 AGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 41478424 Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559 | || || || | ||| |||||| | |||||| || | || ||| |||| ||||| Sbjct 41478425 CGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATG 41478484 Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619 || ||||| || ||||| || ||| ||||| |||||||| | | || | || | Sbjct 41478485 CCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTC 41478543 Query 36620 AGTTTATTCCAATCATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 || ||||| || || || || || || | ||||| || || ||||| || Sbjct 41478544 AG-GGATTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAA 41478599 Query 36676 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 36735 || || || ||||| ||| |||| | |||||| ||||| || | | || || || || Sbjct 41478600 GGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGATGAC 41478659 Query 36736 AAA 36738 ||| Sbjct 41478660 AAA 41478662 Score = 199 bits (220), Expect = 5e-46 Identities = 314/444 (71%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 36170 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 36229 ||||||| |||||| || || ||||| | ||| ||| |||| ||||| || ||||| || Sbjct 119131877 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGGCCAGGCATCAGT 119131818 Query 36230 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 36289 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 119131817 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 119131758 Query 36290 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACTTTTG 36345 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 119131757 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 119131698 Query 36346 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 36405 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 119131697 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 119131640 Query 36406 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 36465 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 119131639 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 119131582 Query 36466 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGT 36525 |||||| || || ||||| || || ||||| || | || |||||||| | |||| Sbjct 119131581 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 119131522 Query 36526 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 36585 | |||| |||| | | ||||||| ||||| || |||| |||||||| || |||| Sbjct 119131521 AACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 119131462 Query 36586 TACATGTTTTATAAAATATTTTTC 36609 | || |||||||||| |||| Sbjct 119131461 AATATAGGATATAAAATATCTTTC 119131438 >seq223 Length=128539186 Score = 174 bits (192), Expect = 2e-38 Identities = 168/215 (78%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277 |||||| ||| || |||||| | |||||| || | ||||||| |||| ||| ||||| Sbjct 61818745 TTTTAA---TTACTTTTTATTAACTGCTTCCAGAAACCGTAACAGGTGCAGGAATAGATT 61818801 Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337 ||||||||||||||||| |||| | ||||| || || |||||||| || || ||||| Sbjct 61818802 GATGATATCCAAGTAGAGGCTGATGGCAGCTAATACGTACTCTTCAGGTGACAGTTTATG 61818861 Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397 || |||||||| ||||||||||| |||||||| ||||| | |||||| || ||||| Sbjct 61818862 CATCAGTGAGTGTGTGTCATAGATGATGAATCCACAGAAAAGAAGGGCTCCTGCAGCAGC 61818921 Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATA 9432 | ||||| ||||| ||| ||||| | | ||||| Sbjct 61818922 TAAGACCAACTCCATTGTCTCACTATAAAAAAATA 61818956 Score = 129 bits (142), Expect = 8e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||||| ||| |||||||| ||||| |||||||||||||| |||||| | ||| | Sbjct 61826603 CCAGCTCCAAATTTGCTGAAATCCCTCTTAGATTGTAGAGTATACACAGTCAAACCAAAA 61826662 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||| ||||||||| ||||||||||||| || | || ||||||||||||||||| Sbjct 61826663 AATACTGTAGTAGTCAGTATGAAAGCTTGCAAAATAATATATACATCATAGAAAGTAAC 61826721 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||| Sbjct 61850535 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCTGCTGCCATAGTTGAAGTCGTCCTCGA 61850594 Query 9907 TGGAGGAGCACGCGTA 9922 | |||||||| | ||| Sbjct 61850595 TCGAGGAGCAAGGGTA 61850610 >seq1 Length=126035930 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 62611399 CTGTTTCTTATACCATA 62611415 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||||||||| | || | |||||||| | Sbjct 62622018 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 62622077 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 62622078 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 62622137 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 62622138 AGGCTCCAGGTAAATAGC 62622155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||||| || || || || || || || || | | Sbjct 62638621 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 62638680 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 62638681 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 62638740 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 62638741 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 62638786 >seq113 Length=139301422 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 97069849 >seq240 Length=107702431 Score = 100 bits (110), Expect = 4e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 36420 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 36479 |||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 36480 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 |||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 >seq127 Length=125710982 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTC--ATCCAAAGCTTGAACTTCT 85916330 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || Sbjct 85916331 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 85916390 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | || | ||| ||| |||| || | || || | |||||| ||||||||| Sbjct 85916391 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 85916450 Query 34078 TCGTCTATTACACCGCCTCCTATATCAATA 34107 || ||||| ||||| |||||| ||||||| Sbjct 85916451 TCATCTATGACACCAGCTCCTACATCAATA 85916480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156312771360