Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq283 138 1e-27 seq331 89.7 4e-13 >seq283 Length=72318688 Score = 138 bits (152), Expect = 1e-27 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| || |||| ||||| || |||||||||||||||||||| || | Sbjct 60039744 TCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 60039685 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| | Sbjct 60039684 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCA 60039625 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 60039624 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 60039581 >seq331 Length=101219884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 187/281 (67%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | Sbjct 86644935 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAGT 86644876 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 |||||||| | || | | |||||| | | | ||| || ||||| ||||| ||||| Sbjct 86644875 TCTCTGCTGAGAACTAACTAAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 86644816 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| || | Sbjct 86644815 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTNNNNNNNNNNAGGT-GTG 86644757 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 ||| || |||| |||||| | | ||| || || || |||||| |||| | || || Sbjct 86644756 GTCGTTCTCTGGAAATACCTGAATTCATTCCTGAGCGGCGGCCAGGGCAGTTCCCCATTC 86644697 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTT 3243 || || || || | | || || || ||||||||||| Sbjct 86644696 TTGCCGATGCCCATGTTTTGGGACACAGCGACGATGCAGTT 86644656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765552105920