Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq423 95.1 9e-15 >seq423 Length=130038232 Score = 95.1 bits (104), Expect = 9e-15 Identities = 124/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Minus Query 22752 CTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAA 22811 |||||| || | |||||| || |||||||| | ||||| | ||||||||||| || Sbjct 41478220 CTTTGCTGCAGCGGAAGGCATC---TTTTCTGGTTATTTTGCATCGATATTCTGGCTCAA 41478164 Query 22812 GAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGG 22871 |||||| || ||||| || | | |||||||| || | || ||| | || || || Sbjct 41478163 GAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGATGAGGG 41478104 Query 22872 TCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 | |||||||||| |||||||| || |||| | || ||| | ||||||| Sbjct 41478103 TTTACACTGTGATTTTGCTTGCCTGATGTTCAATCACCTGGTACACAAACC 41478053 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || ||| || | | |||||||| || ||||| ||||||||||| Sbjct 119131747 GCCTTTGCCCTAGTGGAAAGCACCTTCTTTTCTGGTTCTTTTGCACTGATATTCTGGCTC 119131806 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 ||||||| || ||||| || | | |||| ||| || | |||||| |||| || Sbjct 119131807 AAGAAACAAGGACTGATGCCTGGCCTCACATTTTTCAATGAACTTATTAGCAGTGATGAG 119131866 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| |||||||| |||||||||| Sbjct 119131867 GGTTTACACTGTTACTTTGCTTG 119131889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356224899439612