Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq423 286 5e-72 seq1 120 4e-22 seq240 116 5e-21 seq113 111 2e-19 seq127 98.7 1e-15 >seq423 Length=130038232 Score = 286 bits (316), Expect = 5e-72 Identities = 428/603 (71%), Gaps = 15/603 (2%) Strand=Plus/Plus Query 49945 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCG 50004 || || ||||||| || || ||||| ||||| | |||||| ||||| || || ||||| Sbjct 41478068 TGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCA 41478127 Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||||| ||||| || ||||| || || || || || ||||| ||||| || ||||| Sbjct 41478128 TTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAA 41478187 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 | |||||||||| | ||||| |||| |||||| | |||| | || ||||| | Sbjct 41478188 TAACCAGAAAAGATG---CCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTA 41478244 Query 50125 GCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 50181 || |||| ||||| | |||||||| ||||||||||| |||||||||||| Sbjct 41478245 GCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATC 41478304 Query 50182 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 50241 ||||| |||||||| ||| || | | |||| || |||||| | ||||| || | Sbjct 41478305 GTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTA 41478364 Query 50242 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 50301 | | |||||||||| | ||||| |||||||| ||||| || || || || ||||||| Sbjct 41478365 AGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 41478424 Query 50302 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATT 50361 | || || || | ||| |||||| | |||||| || | || ||| |||| ||||| Sbjct 41478425 CGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATG 41478484 Query 50362 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT 50421 || ||||| || ||||| || ||| ||||| |||||||| | | || | ||| | Sbjct 41478485 CCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTC 41478543 Query 50422 AGTTTATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 || ||||| || || || || || || | || || || || ||||| || Sbjct 41478544 AG-GGATTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAA 41478599 Query 50478 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAAC 50537 || || || ||||| ||| |||| | |||||| ||||| || | | | ||||| || || Sbjct 41478600 GGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGATGAC 41478659 Query 50538 AAA 50540 ||| Sbjct 41478660 AAA 41478662 Score = 199 bits (220), Expect = 6e-46 Identities = 315/445 (71%), Gaps = 10/445 (2%) Strand=Plus/Minus Query 49972 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 50031 ||||| | |||||| || || ||||| ||||| ||| |||| ||||| || ||||| || Sbjct 119131877 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGGCCAGGCATCAGT 119131818 Query 50032 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACT 50091 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 119131817 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 119131758 Query 50092 GCGGCAAAGGCAACAAGTCTCTCTCCA----TAACTGGCGCTGTCATGTATCC-ACTTTT 50146 ||||||||| ||| | |||||| |||| | | ||| |||| || Sbjct 119131757 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCCAATCCAACACAA 119131699 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 || ||||| | |||||||| || |||| |||||| ||||| |||||||| |||||| | | Sbjct 119131698 GA-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATT 119131641 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 |||| || |||||||| || || || || | ||||||| || || ||||| | Sbjct 119131640 CCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTA 119131583 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 ||||||| || || || || || || ||||| || | || |||||||| | |||| Sbjct 119131582 TGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTT 119131523 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | |||| |||| | | ||||||| ||||| || |||| |||||||| || |||| Sbjct 119131522 GAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCA 119131463 Query 50387 ATACATGTTTTATAAAATGTTTTTC 50411 | || |||||||| | |||| Sbjct 119131462 GAATATAGGATATAAAATATCTTTC 119131438 >seq1 Length=126035930 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 62622022 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 62622081 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 62622082 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 62622141 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 62622142 TCCAGGTAAATAGC 62622155 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 62611399 CTGTTTCTTATACCATA 62611415 >seq240 Length=107702431 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| |||||||| ||||| || ||||| || || || || | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 50102 CAAC 50105 | || Sbjct 97515105 CTAC 97515108 Score = 96.9 bits (106), Expect = 5e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 50222 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 50281 |||| | ||||| || || | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 50282 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 | || || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 >seq113 Length=139301422 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || ||||| |||||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 97069850 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 97069851 ACCACTCTTTCCCC 97069864 >seq127 Length=125710982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTC 47762 |||||| || ||||| ||| | || || || || ||| | || ||| ||||| || Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 85916332 Query 47763 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 47822 | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || || Sbjct 85916333 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 85916392 Query 47823 ATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 47882 | ||| | ||| ||| |||| || | || || | ||||| ||||||||||| Sbjct 85916393 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 85916452 Query 47883 GTCTATTACACCACCTCCTATATCAAT 47909 ||||| |||||| |||||| |||||| Sbjct 85916453 ATCTATGACACCAGCTCCTACATCAAT 85916479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250807366560