Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq423 239 4e-58 seq240 120 3e-22 >seq423 Length=130038232 Score = 239 bits (264), Expect = 4e-58 Identities = 485/716 (68%), Gaps = 17/716 (2%) Strand=Plus/Plus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || || ||||| || ||||||||||| || ||| |||||| ||||| ||| Sbjct 41477802 TGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTCC 41477856 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| |||||||| || | | || || || | |||| ||||| | | Sbjct 41477857 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATGC-- 41477914 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 || || | | ||||||||| ||||| | ||| | |||||||| || || || || Sbjct 41477915 CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGCTTC 41477974 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | || | || || | |||||| ||||| | | ||||| || Sbjct 41477975 ACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCAT---TGATAATTCTT 41478031 Query 13824 G---TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 13880 | || |||| | | || | | || || || || || | || |||||| Sbjct 41478032 TCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAA 41478091 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||||| || | ||||||||||| || |||||||| || |||||||| | || |||||| Sbjct 41478092 TCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 41478151 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | ||||||||| || | ||| ||||| | ||||| | || ||||||| | || || Sbjct 41478152 AGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCC 41478208 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 |||||||||| ||| | ||||| ||| | | ||| ||||| | ||||| | Sbjct 41478209 GCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCAGTGC 41478268 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 ||||| || | || ||||| | | || ||| |||||||| ||||| || | || Sbjct 41478269 AAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAAT 41478328 Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 14180 ||| | ||||| | | | ||||| || ||| |||| || ||||||||| |||| ||| Sbjct 41478329 TCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGT 41478388 Query 14181 ATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC 14240 ||||||||||| || || || || ||| | || || | ||||| | | || ||||| Sbjct 41478389 ATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCT 41478448 Query 14241 GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | ||||| || |||| ||| |||| ||||| |||||||| || ||||| || Sbjct 41478449 TGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 41478503 Score = 156 bits (172), Expect = 4e-33 Identities = 296/431 (69%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || ||||||| | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | || |||| | | || || || | | | | ||||||||||| ||||| Sbjct 119131709 ATCCAACA-CAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTTCAATGGCATT 119131652 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | ||||| | ||||| || | ||||| ||| ||||||| | |||| || Sbjct 119131651 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTAT 119131594 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 ||||| ||||||||||| ||||| || || || ||||| ||||| | ||| | Sbjct 119131593 GTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 119131534 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || | ||| |||| ||| ||| ||||||| ||||| ||||||| ||||| Sbjct 119131533 CTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGC 119131474 Query 14291 AAAAAATGCCA 14301 ||| || |||| Sbjct 119131473 AAAGAAAGCCA 119131463 >seq240 Length=107702431 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 97515105 CTACGACACGTTCACC 97515120 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 97512833 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97512891 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 97512892 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97512951 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 97512952 CATAAAGTCAAATGGGTT 97512969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479715982813600