Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq423 217 1e-51 seq240 114 1e-20 >seq423 Length=130038232 Score = 217 bits (240), Expect = 1e-51 Identities = 480/714 (67%), Gaps = 13/714 (2%) Strand=Plus/Plus Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || || ||||| || ||||| ||||| || ||| |||||| ||||| ||| Sbjct 41477802 TGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCTCC 41477856 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 ||||| || ||||| || | | || || || | |||| ||||| | | Sbjct 41477857 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATGC-- 41477914 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 || || | | ||||||||| ||||| | ||| | |||||||| || || || || Sbjct 41477915 CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGCTTC 41477974 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA-T 13610 ||||| | | ||| | || || | |||||| ||||| | | | || | | Sbjct 41477975 ACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCTTTCT 41478034 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 |||| | | || | | || | | || || || || || | || |||||||| Sbjct 41478035 CTTATTC-TCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATC 41478093 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| || | ||||||||||| || |||||||| || |||||||| | || ||||||| Sbjct 41478094 ACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 41478153 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 ||||||||| || | ||| ||||| | || || | || ||||||| | || || | Sbjct 41478154 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGC 41478210 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 ||||||||| ||| | ||||| ||| | | ||| ||||| ||||| | Sbjct 41478211 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCAGTGCAA 41478270 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| || | || ||||| | | || ||| ||||| || |||||||| | ||| Sbjct 41478271 GGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTC 41478330 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | | ||||| | | | ||||| || ||| |||| || ||||||||| |||| ||||| Sbjct 41478331 CCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGTAT 41478390 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 |||||| || || || || || ||| | ||||| | ||||||| | || || || Sbjct 41478391 GTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTG 41478450 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 | ||||| || |||||||| |||| || || |||||||| || ||||| || Sbjct 41478451 GCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 41478503 Score = 141 bits (156), Expect = 9e-29 Identities = 293/431 (68%), Gaps = 5/431 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || ||||||| | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| || | ||| ||||| || || || || |||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||| ||| | ||||||||| | | | |||||| Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | || |||| | | || || || | | | | |||||||| || ||||| Sbjct 119131709 ATCCAACA-CAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTTCAATGGCATT 119131652 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | ||||| || | ||||| ||| ||||||| | |||| || Sbjct 119131651 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTAT 119131594 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||||| ||||||||||||||||| || || || ||||| || || | ||||| Sbjct 119131593 GTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 119131534 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || | || |||| ||| ||| |||||||| || || ||||||| ||||| Sbjct 119131533 CTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGC 119131474 Query 14079 AAAAAATGCCA 14089 ||| || |||| Sbjct 119131473 AAAGAAAGCCA 119131463 >seq240 Length=107702431 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 97515105 CTACGACACGTTCACC 97515120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 97512833 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 97512891 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 97512892 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 97512951 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 97512952 CATAAAGTCAAATGGGTT 97512969 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 97517464 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 97517523 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 97517524 AAGCCATAGAAACAGCGGGCTTCTG 97517548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478576811350560