Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq423 286 5e-72 seq113 116 5e-21 seq240 114 2e-20 seq1 114 2e-20 seq127 96.9 5e-15 >seq423 Length=130038232 Score = 286 bits (316), Expect = 5e-72 Identities = 428/603 (71%), Gaps = 15/603 (2%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 || || ||||||| || || ||||| ||||| | |||||||||||| || || | ||| Sbjct 41478068 TGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCA 41478127 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||| ||||| || ||||| || || || || || ||||| ||||| || ||||| Sbjct 41478128 TTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAA 41478187 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 42226 | |||||||||| | ||||| |||| |||||| | | || | || ||||| | Sbjct 41478188 TAACCAGAAAAGATG---CCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTA 41478244 Query 42227 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 | | |||| ||||| | |||||||| ||||||||||| |||||||||||| Sbjct 41478245 GCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATC 41478304 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 ||||| |||||||| ||| || | | |||| || |||||| | || || || | Sbjct 41478305 GTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTA 41478364 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | | |||||||||| | ||||| |||||||| ||||| || || || || ||||||| Sbjct 41478365 AGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 41478424 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466 | ||| || || ||||| |||||| | |||||| || | || ||| | || ||||| Sbjct 41478425 CGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATG 41478484 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526 || ||||| || ||||| || ||| ||||| |||||||| | | || | ||| || Sbjct 41478485 CCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCT-CGGGCTT 41478542 Query 42527 AATTTATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 | ||||| || || || || || || | || || || || ||||| || Sbjct 41478543 CAGGGATTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAA 41478599 Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAAC 42642 || ||||| ||||| ||| |||| | |||||||||||| || | | ||||| || || Sbjct 41478600 GGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGATGAC 41478659 Query 42643 AAA 42645 ||| Sbjct 41478660 AAA 41478662 Score = 197 bits (218), Expect = 2e-45 Identities = 317/450 (70%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136 ||||| | ||||||||| || ||||| | ||| ||| |||| ||||| || ||||| || Sbjct 119131877 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGGCCAGGCATCAGT 119131818 Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196 || | || || ||||| ||||| ||||| || |||||||||||| | | ||| ||| Sbjct 119131817 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 119131758 Query 42197 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACTTTTG 42252 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 119131757 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 119131698 Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 | ||||| | |||||||| || |||| |||||| ||||| |||||||| |||||| | | Sbjct 119131697 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 119131640 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 |||| || |||||||| || ||| || || | ||||||| || || ||||| || Sbjct 119131639 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 119131582 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 |||||| || || || || || || ||||| || || || |||| ||| | |||| Sbjct 119131581 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 119131522 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | |||| |||| | | ||||| | ||||| || |||| |||||||| || |||| Sbjct 119131521 AACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 119131462 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGG 42522 | || |||||||||| |||| || || Sbjct 119131461 AATATAGGATATAAAATATCTTTCCTCAGG 119131432 >seq113 Length=139301422 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 97069849 >seq240 Length=107702431 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | ||| |||||||| ||||| || ||||| || || || || | Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 42207 C 42207 | Sbjct 97515105 C 97515105 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 42327 CTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCA 42386 |||| | || || || || | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 42387 TCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 | || || || |||||||| | ||| || |||| ||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 41697 AAATATCGGCATTTAT---GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT 41753 ||||| ||||| | | ||| |||| |||||| |||| || | |||| ||| ||| Sbjct 97512807 AAATAAGGGCATATCTTCAGTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG 97512866 Query 41754 CTTGA---GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAG 41810 | || ||||| |||||||| | || || || || || | || || || || |||| Sbjct 97512867 TTGGACTTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAG 97512926 Query 41811 TCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||||||||||| ||| ||||| ||||| || ||||| || || Sbjct 97512927 TCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 97512969 >seq1 Length=126035930 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| |||| || || ||||| |||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| || || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || |||||||||| | ||| Sbjct 62622022 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 62622081 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| ||||| | | || || ||||||| || Sbjct 62622082 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 62622141 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 62622142 TCCAGGTAAATAGC 62622155 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || |||||||| || || || ||||| || || | | || | Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 62611399 CTGTTTCTTATACCAT 62611414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || |||||||| || | | | ||| || ||||| || || || | || |||| Sbjct 62616529 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGGGCGCCAT 62616588 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || |||| |||||| || ||| ||||| | || ||||| || | Sbjct 62616589 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAATTGGGCTTCTGCACTCTCAAAAGGGT 62616648 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || ||||| || ||||| | |||||||| ||||| || || || | || | Sbjct 62616649 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGAACCCCAATTCCAATGGGGCGATGAC 62616708 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 62616709 GTTTATTTGA 62616718 >seq127 Length=125710982 Score = 96.9 bits (106), Expect = 5e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTC 39857 |||||| || ||||| ||| | || || || || ||| | || ||| |||||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAACTTCTTC 85916332 Query 39858 CAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTAC 39917 | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || || Sbjct 85916333 TATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 85916392 Query 39918 ATTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTC 39977 | || | ||| ||| |||| || | || || | ||||| ||||||||||| Sbjct 85916393 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 85916452 Query 39978 GTCTATTACACCGCCTCCTATATCAATA 40005 ||||| ||||| |||||| ||||||| Sbjct 85916453 ATCTATGACACCAGCTCCTACATCAATA 85916480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122387963040