Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 2e-12 >seq11 Length=90373283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/213 (69%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||||| ||||| || ||||| ||||||||||| || || Sbjct 26593033 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACA-----------TC 26593081 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| ||||| || |||||| ||||||| | ||||||||| ||||| || ||||| || || Sbjct 26593082 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 26593141 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || |||| | ||| |||| | |||||| || |||| || | || Sbjct 26593142 CTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGATGGT 26593201 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || || | ||||| ||||| || ||||| Sbjct 26593202 CTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 26593234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001699289280