Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq423 250 2e-61 seq113 102 7e-17 seq240 82.4 7e-11 >seq423 Length=130038232 Score = 250 bits (276), Expect = 2e-61 Identities = 574/855 (67%), Gaps = 31/855 (4%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || || ||||| || ||||| ||||| || |||| | |||||||| ||| Sbjct 41477802 TGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 41477856 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || || | || | || || || | || | ||| || | Sbjct 41477857 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCAGCAT 41477912 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||| | |||||||| ||||| || ||| ||| | || ||||| || || | Sbjct 41477913 GC--CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAG 41477970 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| || || || | |||| | |||||| ||| || | ||||| | | Sbjct 41477971 CTTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCT 41478030 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 ||||||||| | ||| ||||| | | || || || ||||||| || ||||| Sbjct 41478031 TTCTCTTATTCTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAA 41478090 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||||||| || || |||||||| || || || || || |||||||| || || ||||| Sbjct 41478091 ATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 41478150 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || |||||||| || | ||| ||||| | ||||| |||| | |||| || ||||| Sbjct 41478151 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 41478207 Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CTATTTTTACTCTCTATCCAC 13336 |||| ||||| ||| |||| | ||| ||||| ||| || ||| | | | ||||| Sbjct 41478208 CGCTGCAGCAAAGACTA-CAACACGTTCCCCATAGGTAGCTGATTTGTC-CCCAATCCAG 41478265 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | |||||| | ||| || | ||| || || ||| |||| || || || || | Sbjct 41478266 TGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGA 41478325 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 | | |||| || ||| || ||||| || | | || ||||||||| | ||| Sbjct 41478326 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAA 41478385 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || || |||||||| || |||||||| ||| | ||||| | || |||| ||||||||| Sbjct 41478386 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 41478445 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | ||||| || | |||||| | || ||||| || ||||| || ||||| ||| Sbjct 41478446 TCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAA 41478504 Query 13577 GCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGG 13632 | || | || ||||| | | | || | ||| | | | ||| | Sbjct 41478505 ACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCCA 41478560 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || || || || | || |||||||| |||||| || ||||| | ||||||||| | Sbjct 41478561 AATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACA 41478620 Query 13693 CATCATCCATATATC 13707 |||| ||| ||||| Sbjct 41478621 CATCTGCCAGATATC 41478635 >seq113 Length=139301422 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 97069729 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97069788 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 97069789 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97069848 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 97069849 CCACCACTCTTTCCCC 97069864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 97058791 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 97058850 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 97058851 ATAAAATCAAAAGGATTTT 97058869 >seq240 Length=107702431 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 97517464 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 97517522 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 97517523 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 97517561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971873793608