Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_005880.2 Length=148317 Score E Sequences producing significant alignments: (Bits) Value seq657 109 5e-19 >seq657 Length=35860 Score = 109 bits (120), Expect = 5e-19 Identities = 291/440 (66%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 98022 GGTAGTGGTGCTGTTTACCTAAATATATTCCACAATGATATCTTGGATTTATTAAGCTCT 98081 || || ||||| | ||| ||| ||| || ||| ||||| | | ||||| ||| | | Sbjct 33430 GGAAGCGGTGCCGCTTATTTAAGTATTTTTCACTATGATTTGGTCGATTTTTTAGATTGT 33371 Query 98082 AAGAAAATCAATGCCAGTGAGTCTGTTAGACTAGATAAATTATCTATTGGTGTTACAATC 98141 |||||||| ||||| ||| |||| || | | |||||||||||| | | | Sbjct 33370 AAGAAAATTAATGCAGATGAAAAATCTAGAATACAGACTTTATCTATTGGTTTAATTGTT 33311 Query 98142 CCTAACAAATTTATGGAGTTAGTTAAAGAAGGTAAACCTTTCTATACTTTTGATACT--T 98199 || | || ||| || | |||| |||||| |||| || |||| || || || | Sbjct 33310 CCAGATAAGTTTTTGCAATTAGCCAAAGAAAATAAAGACTTTTATATCTTCGAGCCTAAT 33251 Query 98200 ACGACATTAATAAAATGTACGGTAAGTATTTAGATGAGCTAAACATTGATGAATGGTATG 98259 || | || ||||| | | | | |||| || |||| ||||||||||||||| Sbjct 33250 ACTATTTTTCAAAAATATTCAATT--TTTTTATCAGATTTAAATTTTGATGAATGGTATG 33193 Query 98260 ATAAGTTACTAAATAATGATAGTATCG-GTAAAGTAAAACATGATGCTAGAGAAGTTATG 98318 | || ||| | | ||| | ||| | ||| ||| || |||||| || | Sbjct 33192 ACAAATTAGCAGAAGATGCTGAAATCTTGAAAAAGAAATTATC-TGCTAGGTCTATTTTA 33134 Query 98319 ACAGACATTGCTAAAACACAATTAGAATCAGGGTACCCTTATGTATTCTATATTGATAAT 98378 || | || ||| |||| || || |||||||| || || |||||| | | ||| |||||| Sbjct 33133 ACTAAAATAGCTCAAACTCAGTTTGAATCAGGCTATCCATATGTAATATTTATAGATAAT 33074 Query 98379 GCTAATGATAATCACCCATTGAAAAACCTAGGTAAAGTTAAAATGAGTAACTTATGTACA 98438 || ||| | | || || || || |||| || | ||||||||||| ||||| || Sbjct 33073 GCCAATAGACAGAATCCTTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATGCACT 33014 Query 98439 GAAATTTCACAATTACAAGA 98458 ||||||| ||| | ||||| Sbjct 33013 GAAATTTTTCAAATTCAAGA 32994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474474514115680