Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq270 87.8 9e-13 seq368 84.2 1e-11 seq1952 82.4 4e-11 seq253 82.4 4e-11 >seq270 Length=71996105 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 44838294 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 44838353 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 44838354 AACTGAGCTAACCGGCC 44838370 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 45247660 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45247601 Query 11528 CCGTCG 11533 || ||| Sbjct 45247600 CCCTCG 45247595 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | ||||||||||| ||||||| ||||||||||||| || |||| |||||| Sbjct 45228123 TGGCCCGTACGAGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACACTCTAACCAAC 45228182 Query 11516 TGAGCTAATGGGCCG 11530 |||||||| ||||| Sbjct 45228183 TGAGCTAACCGGCCG 45228197 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 44858075 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 44858134 Query 11528 CC 11529 || Sbjct 44858135 CC 44858136 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 45661183 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45661242 Query 11528 CC 11529 || Sbjct 45661243 CC 45661244 >seq368 Length=84932903 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| | | | |||||| | |||||||||| ||||||| |||||||||||| Sbjct 80243083 AACAAAAAAGCGAGACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 80243024 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 80243023 CCACGCTCTAACCAACTGAGCTAACCGGCC 80242994 >seq1952 Length=29805 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 20417 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 20358 Query 11528 CC 11529 || Sbjct 20357 CC 20356 >seq253 Length=75148670 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 7567109 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 7567050 Query 11528 CC 11529 || Sbjct 7567049 CC 7567048 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484813404304