Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq223 134 1e-26 seq247 123 2e-23 seq98 118 1e-21 seq253 116 3e-21 seq68 93.3 4e-14 seq11 93.3 4e-14 seq422 87.8 2e-12 seq227 82.4 7e-11 >seq223 Length=128539186 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||||||||| || || || || || | ||| || || | Sbjct 120278386 CCACCTCTGAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278445 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| |||||| ||||||| | || ||||| || |||||| Sbjct 120278446 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 120278505 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || ||||||||||| ||| |||||| | | || || Sbjct 120278506 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 120278565 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || ||||| ||||| ||||| ||||||||||| Sbjct 120278566 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 120278612 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| |||| |||||||||| ||| || || || || | ||| || || | Sbjct 120277930 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120277989 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| || ||||| Sbjct 120277990 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 120278049 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || ||||||||||| | | ||||| | | || || Sbjct 120278050 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 120278109 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 120278110 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278156 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| ||||| || || || || || | ||| || || | Sbjct 120278158 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278217 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||||||||| ||||||| || || || || || ||||| Sbjct 120278218 AGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGG 120278277 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || ||||||||||| ||| |||||| | | || || Sbjct 120278278 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 120278337 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || ||||| ||||||||||| Sbjct 120278338 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278384 >seq247 Length=91754291 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || || || | ||| || || Sbjct 30514616 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 30514675 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| || || || Sbjct 30514676 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 30514735 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || ||||| | | |||||| | | ||||| Sbjct 30514736 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 30514795 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || | ||||||||||| || || || || |||||||||||||||||| || Sbjct 30514796 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 30514846 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| ||| || | ||||| || || || ||||| || || Sbjct 72049734 ATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTT 72049675 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | |||||| | | | || |||| ||||| Sbjct 72049674 GTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTAACCTCAAGAGTGAT 72049615 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || ||||||||||||||||| Sbjct 72049614 GGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72049579 >seq98 Length=135778131 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94784 CCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATA 94843 |||| || |||||||||| ||||| || || || || || | ||| || | | | Sbjct 37173962 CCTCGCAGGCGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGA 37173903 Query 94844 GTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATA 94903 ||| | ||| ||||||||||| ||| |||| || | | ||||| || || || ||| Sbjct 37173902 GTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATA 37173843 Query 94904 CCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCA 94963 || || ||||| | |||||| || |||||| | | |||||| | | ||||| ||| Sbjct 37173842 CCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCA 37173783 Query 94964 ATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | ||||||||||| || | || || ||||||||||||||||| || Sbjct 37173782 AGGGTGATGGTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTTT 37173735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || || ||| Sbjct 2002783 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 2002724 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 2002723 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 2002664 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || | || | ||||| Sbjct 2002663 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACCCTCGAGGGTGAT 2002604 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| |||||||| || |||||||| Sbjct 2002603 GGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2002568 >seq253 Length=75148670 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||||||||| || || ||||| || | ||| || || Sbjct 15288042 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15288101 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || ||| Sbjct 15288102 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGA 15288161 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||||| ||||| || ||| |||||| | | || || Sbjct 15288162 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15288221 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || ||||| ||||||||||| Sbjct 15288222 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15288268 Score = 100 bits (110), Expect = 3e-16 Identities = 168/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||| | || ||| || || |||| |||| |||| ||||| || || ||||| || Sbjct 15279406 TTAAGAATTAACAG-CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGG 15279464 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | ||| || || | |||| | ||| |||||||| || || ||||||| | || Sbjct 15279465 ATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTC 15279524 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || || || |||||||| || | || || ||||| || ||| ||| Sbjct 15279525 TGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTG 15279584 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || || | |||||||| || || || || || ||||| ||||||||| Sbjct 15279585 TCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGC 15279644 Query 95006 AT 95007 || Sbjct 15279645 AT 15279646 >seq68 Length=92142175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | || || || | ||| Sbjct 7889852 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGTCC 7889793 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 7889792 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 7889733 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | || || || | ||||| Sbjct 7889732 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 7889673 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || ||||| |||||||| || |||||||| Sbjct 7889672 GATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7889637 >seq11 Length=90373283 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/216 (69%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | ||| ||||| ||| Sbjct 26593030 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGACAT--------- 26593080 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 | ||||| || || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 26593081 --CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 26593138 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | |||| | | || || |||| ||||| Sbjct 26593139 ATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGAT 26593198 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| |||||||| || |||||||| Sbjct 26593199 GGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 26593234 >seq422 Length=24206276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||| || || || || || | ||||||||| | ||||| | |||||| Sbjct 21869801 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 21869742 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || |||| || | ||||| || || || || || || ||||||| Sbjct 21869741 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 21869682 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || || ||||| | |||||| | | | ||| |||| ||||||||| | Sbjct 21869681 GATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGATGGACCTCAAAGGTGATGGTTCT 21869622 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || || ||| ||||||||||| Sbjct 21869621 TCCTGTGAGGGTCTTTACAGAGATCTGCATG 21869591 >seq227 Length=108555830 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| || || | ||||| | ||| || || | |||| | |||||| Sbjct 57866724 CACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTC 57866783 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | | ||||| || || || ||||| |||| ||| | Sbjct 57866784 CAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGTCTTG 57866843 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| || |||| | |||| | | | ||||| |||| ||||||| || Sbjct 57866844 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTT 57866903 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||||| |||||| Sbjct 57866904 GCCCGTGAGGGTCTTCACAAAGAGCTGCAT 57866933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279970305440