Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq270 159 5e-35 seq1261 131 3e-26 >seq270 Length=71996105 Score = 159 bits (176), Expect = 5e-35 Identities = 194/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 46064098 CGCCAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 46064156 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 46064157 TCCGGCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 46064216 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| ||||| | || || | | || |||| |||||| || ||| || | Sbjct 46064217 CTCGCGGAGTTCTGAAGGTTTTTCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 46064276 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 46064277 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 46064336 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| ||||| Sbjct 46064337 GACGCACTCTGTATGGCTTTGG 46064358 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | || || || |||||||| || || ||||||||||| ||| Sbjct 45370440 GCCAAGCGCCATCGCAAAGTGCTGCGCGACAACATCCAGGGCATTACCAAGCCAGCCATC 45370381 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| |||| ||| | ||||||| |||| Sbjct 45370380 CGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGACTCATCTATGAGGAGACC 45370321 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || || | ||| || ||| Sbjct 45370320 CGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 45370261 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 45370260 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 45370201 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 45370200 CGCACCCTTTATGGCTTCGG 45370181 Score = 150 bits (166), Expect = 3e-32 Identities = 194/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || ||||| || || ||||||||||| || || Sbjct 45971897 CGCTAAGCGTCACCGCAAGGTTTTGCGGGACAACATTCAGGGCATCACCAAGCCTGCCAT 45971956 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 45971957 TCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGAC 45972016 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| || | |||||| || || || || Sbjct 45972017 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTCACTTACACGGA 45972076 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||||| |||||||| || | |||||| | |||||||| |||| || || || Sbjct 45972077 GCACGCCAAACGCAAGACTGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 45972136 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| || || || ||||| Sbjct 45972137 ACGCACTCTTTACGGCTTCGGTGGTTAA 45972164 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 46152221 GCTAAGCGCCATCGTAAGGTGCTCCGGGATAACATCCAGGGCATCACAAAGCCGGCTATT 46152162 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| || ||||| |||||||| | || || | | ||||| || | | Sbjct 46152161 CGTCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTCATTTATGAGGAAACT 46152102 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | ||| |||||| | || ||| | |||||| ||| Sbjct 46152101 CGAGGTGTGCTGAAGGTTTTCTTAGAGAACGTTATTCGAGACGCTGTTACCTATACAGAG 46152042 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || || || | |||||||| || Sbjct 46152041 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATACGCTCTAAAACGTCAGGGG 46151982 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 46151981 CGCACTCTGTATGGCTTCGG 46151962 Score = 145 bits (160), Expect = 1e-30 Identities = 193/268 (72%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 44707711 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 44707652 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 44707651 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 44707592 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| ||||||| ||| ||| |||| || ||| | |||||| || Sbjct 44707591 CCGCGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTATACGGA 44707532 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 44707531 GCACGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 44707472 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 44707471 TCGCACCCTCTACGGTTTCGGCGGTTAA 44707444 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 46233734 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 46233676 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 46233675 CCGGCGTCTGGCCCGGCGTGGCGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 46233616 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| || Sbjct 46233615 TCGCGGGGTGCTCAAGGTGTTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 46233556 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| | ||||| | ||||| || | || || || || Sbjct 46233555 ACACGCCAAGCGCAAGACAGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 46233496 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 46233495 ACGCACCCTTTATGGCTTTGG 46233475 Score = 134 bits (148), Expect = 2e-27 Identities = 197/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||||||||| || || || || ||||| Sbjct 46229444 CGCCAAGCGCCACCGGAAAGTGCTGCGGGATAACATCCAAGGCATTACTAAACCTGCTAT 46229503 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||| | ||||||||||| || || |||| || ||| | || || |||| Sbjct 46229504 TCGGCGCCTTGCTAGGCGTGGTGGAGTTAAACGGATCTCCGGTTTGATTTACGAGGAGAC 46229563 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| ||| |||| || || | ||||| || Sbjct 46229564 CCGAGGCGTTCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTGACATATACGGA 46229623 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 46229624 GCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGG 46229683 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | | || ||||| || |||||| || || ||| Sbjct 46229684 ACGCACTCTATACGGTTTCGGCGGTTAATATTTTAGTCA 46229722 Score = 120 bits (132), Expect = 5e-23 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| || || || |||||||| |||| || || || || Sbjct 46011151 CGTGATAACATCCAGGGCATCACGAAACCCGCCATCCGTCGCTTGGCCCGACGCGGCGGC 46011092 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || |||| || | | ||||| |||| || | ||| | ||| | || || Sbjct 46011091 GTGAAACGCATCTCGGGCCTCATTTATGAGGAGACCCGGGGTGTGCTTAAGGTGTTTCTG 46011032 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || |||| |||||| | ||| || |||||||| || |||||||| |||||| Sbjct 46011031 GAGAATGTGATCCGGGATGCTGTAACCTACACGGAGCACGCCAAGCGTAAGACAGTCACC 46010972 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| | ||||| || | || ||||| || || | | || || ||||| Sbjct 46010971 GCCATGGATGTGGTCTACGCGCTCAAGCGTCAGGGTCGCACTCTGTACGGCTTTGG 46010916 Score = 105 bits (116), Expect = 1e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 44703120 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 44703179 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 44703180 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 44703239 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| ||||||| ||| ||| |||| || ||| | |||||| || Sbjct 44703240 CCGCGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGGCCTATACGGA 44703299 Query 16612 GCACGC 16617 |||||| Sbjct 44703300 GCACGC 44703305 Score = 102 bits (112), Expect = 1e-17 Identities = 179/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || || || || || |||||||||||||| || Sbjct 44658060 CGCTAAGCGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGCATCACCAAGCCAGCCAT 44658119 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || || || |||| || | | || || |||| Sbjct 44658120 CCGACGCCTGGCACGGCGTGGAGGCGTTAAACGCATCTCAGGCCTTATATACGAGGAGAC 44658179 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 44658180 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 44658239 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 44658240 ACATGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 44658299 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| ||||| Sbjct 44658300 TCGCACCCTCTATGGCTTTGG 44658320 Score = 80.6 bits (88), Expect = 4e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 44708357 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 44708298 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| || || ||||| || || || || ||||| ||||||| | |||| || |||| Sbjct 44708297 CCGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGA 44708239 >seq1261 Length=7068 Score = 131 bits (144), Expect = 3e-26 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 4587 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 4645 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||||| | | || || |||| Sbjct 4646 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCTGGCCTCATTTACGAGGAGA 4705 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| |||| Sbjct 4706 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACCTACACCG 4765 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 4766 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 4825 Query 16671 GCCG 16674 | || Sbjct 4826 GGCG 4829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073367728772