Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq423 158 1e-33 seq113 98.7 1e-15 seq240 87.8 2e-12 >seq423 Length=130038232 Score = 158 bits (174), Expect = 1e-33 Identities = 521/808 (64%), Gaps = 17/808 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | | ||| | ||| Sbjct 41477736 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCAACACCACTCCT 41477795 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 | | ||||| || || ||||| || || || || || ||||||| | ||| ||| Sbjct 41477796 GTCCTCTGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 41477850 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| || || | | || | || || |||||||||| | Sbjct 41477851 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AG 41477909 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 || || |||| ||||| || || ||||| | ||| |||||||| || || Sbjct 41477910 CATGC-CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATG 41477968 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || ||||| | || | || | || | |||||| || || | | |||| Sbjct 41477969 AGCTTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATT 41478028 Query 21422 ATATTTATTATCCTAGATGTACTAGGG---GGATACAATAATTGTTTAAACATCAAACAT 21478 | | | |||| || | | | || | ||| | || || ||||||| || Sbjct 41478029 CTTTCTCTTATTCTCTCC-TCCAATGGTTTGTGTACCAGG--TGATTGAACATCAGGCAA 41478085 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||||||||| || ||||| ||||| || || || | |||||| |||||||| | || Sbjct 41478086 GCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCA 41478145 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||||| || || | ||| ||||| || ||||| || |||||| ||| Sbjct 41478146 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATG 41478202 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || | |||||||| | || | ||||| || || |||| | ||| ||| ||| Sbjct 41478203 CCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATC 41478262 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 || | ||||| | |||||| | ||| | |||| || || ||||| || || || Sbjct 41478263 CAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAG 41478322 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 || | |||| | ||| ||||| |||||||||| || Sbjct 41478323 CGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCA 41478382 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 |||||||| ||||| || || || || || || | ||||| | || |||| ||| Sbjct 41478383 GAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGA 41478442 Query 21839 ACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAA 21898 || || |||||| | |||||||| |||||||||| |||||||| || ||||| Sbjct 41478443 ACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAG 41478501 Query 21899 AATGCCAATATATTTTTTATAAAATATC 21926 || ||| | || |||||||| || Sbjct 41478502 AAAACCAGAACATGGGATATAAAATCTC 41478529 Score = 89.7 bits (98), Expect = 5e-13 Identities = 291/455 (64%), Gaps = 3/455 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| | ||| || ||||| ||||| || || || | |||||| ||||||| | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAA 21595 || ||||| | |||| || || | ||| ||||| ||||| | || |||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 21596 ATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAAT 21655 ||| || || ||||| || | | ||||| || | ||| ||||| | | Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 21656 ATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTT 21715 ||||| |||| |||||| | || | ||| || |||| ||||| || || Sbjct 119131709 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCATTG 119131651 Query 21716 AAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATT 21775 || ||| | |||| | ||| | ||| ||||| || Sbjct 119131650 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGTCAATAAGGAG--ACTATTTATG 119131593 Query 21776 TCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACAT 21835 ||||||||||| |||||||| || || || || || || || || | |||| | Sbjct 119131592 TCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 119131533 Query 21836 TGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 |||| || | |||| ||| ||| |||||||| |||||| ||||||| || ||| Sbjct 119131532 TGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCA 119131473 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 || || |||| |||| ||||||||||| ||| Sbjct 119131472 AAGAAAGCCAGAATATAGGATATAAAATATCTTTC 119131438 >seq113 Length=139301422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| || |||| Sbjct 97058702 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 97058761 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 97058762 CTGTAGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 97058821 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 97058822 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 97058870 >seq240 Length=107702431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 97512827 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 97512886 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 97512887 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 97512946 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 97512947 TTCTCCATAAAGTCAAATGGGTTCTC 97512972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531887475884960