Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_007021.1 Length=130706 Score E Sequences producing significant alignments: (Bits) Value seq657 89.7 4e-13 >seq657 Length=35860 Score = 89.7 bits (98), Expect = 4e-13 Identities = 264/402 (66%), Gaps = 4/402 (1%) Strand=Plus/Minus Query 57649 TTATTTAAATATATTCCACCCAGATATTCATGAATTTTTAAGTTCTaaaaaaaTTAATGC 57708 |||||||| ||| || ||| ||| | || |||||| || ||| ||||||||||| Sbjct 33416 TTATTTAAGTATTTTTCACTATGATTTGGTCGATTTTTTAGATTGTAAGAAAATTAATGC 33357 Query 57709 TAGTGATAAAGTAAGATTAGACACATTATCTATTGGTGTAACAATACCAAATAAGTTTAT 57768 ||| ||| ||| || | || |||||||||||| ||| | ||| |||||||| | Sbjct 33356 AGATGAAAAATCTAGAATACAGACTTTATCTATTGGTTTAATTGTTCCAGATAAGTTTTT 33297 Query 57769 GGAATTACTTAAAGAAGATAAATACTACTATACATTTAATGTATATGATGTTAAACAAAA 57828 | ||||| |||||| ||||| ||| |||| || | || | || ||||| Sbjct 33296 GCAATTAGCCAAAGAAAATAAAGACTTTTATATCTTCGAGCCTAATACTATTTTTCAAAA 33237 Query 57829 ATATGGGTTTACATTAAATGAAATAAACATGTCCGAGTATTATGATATATTTGTGAATGA 57888 |||| || ||| || |||| | || | ||||| | ||| | | || Sbjct 33236 ATATTCAATTTTTTTATCAGATTTAAATTTTGATGAATGGTATGACAAATTAGCAGAAGA 33177 Query 57889 TGATGATAT-TAGAAAAGAAAAATATTATACAAGAGATATAATGACTGACATTGCAAGAA 57947 || ||| || | ||||| | |||| | | | || ||| | ||| | || || || Sbjct 33176 TGCTGAAATCTTGAAAA-AGAAATTATCTGCTAGGTCTATTTTAACTAAAATAGCTCAAA 33118 Query 57948 CACAACTAGAGTCAGGATACCCTTATGTTTTCTACATTGATAACGCAAAT-GACAATCAC 58006 | || | || ||||| || || ||||| | | || ||||| || ||| ||| | | Sbjct 33117 CTCAGTTTGAATCAGGCTATCCATATGTAATATTTATAGATAATGCCAATAGAC-AGAAT 33059 Query 58007 CCTTTGAAGAAACTAGGTAAAGTTCAAATGTCTAATTTATGC 58048 ||||| |||||| |||| || | ||||| |||||||||| Sbjct 33058 CCTTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATGC 33017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418124187589948