Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 9e-15 seq423 86.0 2e-11 >seq1 Length=126035930 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || || | || ||||| || || |||||| Sbjct 62620537 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAAACAGAAACAGGCACCCCGTATATG 62620478 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 62620477 CTCTACAAAGATTCCTGTAATCGAAAGAGCAACCAGCAGAACCTGGGAACCATCAAATGC 62620418 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || |||||| Sbjct 62620417 AGCAACCTGTGCACAGAAATAGTGGAGTACACC 62620385 >seq423 Length=130038232 Score = 86.0 bits (94), Expect = 2e-11 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 || || |||||||||||||| || | ||||| | |||| | | | | | |||| Sbjct 41478291 AAAAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAATCAGCTACCTATGGGGAA 41478232 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAAT 22550 ||| || | | ||||||| | |||||||| ||||||||| |||||| | || Sbjct 41478231 CGTGTTGTAGTCTTTGCTGCAGCGGAAGGCAT---CTTTTCTGGTT-ATTTTGCATCGAT 41478176 Query 22551 CTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAG 22610 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | || || Sbjct 41478175 ATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAG 41478116 Query 22611 CCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 | ||||||||||| | || |||||||| || Sbjct 41478115 CAGAGATGAGGGTTTACACTGTGATTTTGCTTG 41478083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303320134767128