Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq247 127 1e-24 seq68 127 1e-24 seq423 122 6e-23 seq98 114 9e-21 seq113 113 3e-20 seq127 109 4e-19 seq71 109 4e-19 seq253 95.1 8e-15 seq227 95.1 8e-15 seq223 91.5 1e-13 seq240 84.2 1e-11 seq84 82.4 5e-11 >seq247 Length=91754291 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 27645554 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 27645495 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 27645494 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 27645460 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| || |||||||||| || || ||| ||| || || || ||||| || || Sbjct 30514616 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 30514675 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| ||||||||||| || || || || || | ||| Sbjct 30514676 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 30514735 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| |||||| || ||||||| | || || | || || Sbjct 30514736 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 30514795 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || ||||| ||||| | ||| ||||| || |||||||||||| Sbjct 30514796 TCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 30514846 >seq68 Length=92142175 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 79558030 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 79558089 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 79558090 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 79558124 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||| ||| |||| | || Sbjct 7889849 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGTCCATC 7889790 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 7889789 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7889730 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || | Sbjct 7889729 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGAT 7889670 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 7889669 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7889634 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| | | | || Sbjct 62819007 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTCCATGCATC 62818948 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || ||| || || ||||| || | ||| ||| | | || | ||||| || || Sbjct 62818947 TTCCCGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 62818888 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || | ||| ||||| | | |||||| |||||| || | || || || Sbjct 62818887 CTGGATCTCGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACATCGAGGGTGATGGT 62818828 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | |||||||| ||| |||||||| || Sbjct 62818827 CTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 62818792 >seq423 Length=130038232 Score = 122 bits (134), Expect = 6e-23 Identities = 82/92 (89%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 |||||||||||||||||||||||||| |||||||| ||||| || ||||||||| | Sbjct 56780865 CCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCA 56780806 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||||||||||||||||||||||| Sbjct 56780805 TCCATTCATGCGCGTCACTAATTAGATGACGA 56780774 Score = 102 bits (112), Expect = 5e-17 Identities = 77/91 (85%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 12739364 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 12739423 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 | |||| |||||||| |||||||||||| || Sbjct 12739424 TCATCCATTCATGCGAGTCACTAATTAGTTG 12739454 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | ||||||||| |||||||||||| ||| | ||||||||| |||| |||| Sbjct 2009472 CAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTC 2009413 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 2009412 TTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2009353 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || || || Sbjct 2009352 CTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATCGT 2009293 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | | |||||||| ||| |||||||| || Sbjct 2009292 CTTCTCCCTTAGGGTTTTCATGAAAATCTGCATTTT 2009257 >seq98 Length=135778131 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 2002780 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2002721 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 2002720 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2002661 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||| | || | || || || Sbjct 2002660 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACCCTCGAGGGTGATGGT 2002601 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||||||| |||||||| || Sbjct 2002600 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2002565 >seq113 Length=139301422 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||| ||| |||||||||||||| || |||||||| Sbjct 89595701 AAGCCAGTTCCCTTGGTTGTGGTTTTGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 89595760 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 89595761 TTATCCATTCATGAGCGTCACTAATTAGATGACGA 89595795 >seq127 Length=125710982 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| || |||||||| Sbjct 48792552 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 48792493 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| |||||||||||||||||| || Sbjct 48792492 TCATCCATTCATGTGCGTCACTAATTAGATGAGGA 48792458 >seq71 Length=91010382 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| || ||||| ||||| || |||||||| Sbjct 63559979 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTTGACAGTAGGTAGGGACAGTGGGAATCTCGT 63559920 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||| || Sbjct 63559919 TCATCCATTCATGCACGTCACTAATTAGATGATGA 63559885 >seq253 Length=75148670 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| |||| ||||| || || || |||||| || || ||||| |||| Sbjct 15288040 TACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 15288099 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || |||| || Sbjct 15288100 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGG 15288159 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||||| ||||||||| | || || || | || | Sbjct 15288160 GAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 15288219 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||| ||| |||||||| |||||||| || Sbjct 15288220 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15288271 >seq227 Length=108555830 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 68205706 CAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 68205765 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || | Sbjct 68205766 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATT 68205825 Query 38225 CATAATTTTTTGCTTCACA-TTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | || | ||| ||| || | | ||||| |||| | || | || || | Sbjct 68205826 CTGGATCTCGGCCTTTACATTTTTATATCGTATCCGAGGGTTCAGCCTCGAGGGTGATGG 68205885 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || ||||| | |||||||| ||| |||||||| || Sbjct 68205886 TCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 68205922 >seq223 Length=128539186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | || | |||||| || || ||| ||| || || || ||||| |||||| Sbjct 120278386 CCACCTCTGAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278445 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || || | || || |||| || Sbjct 120278446 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 120278505 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || ||| ||| ||||| | || || || | ||||| Sbjct 120278506 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 120278565 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTTACAA 38326 || | || || || || || |||| || |||||||| ||||||| ||| | |||| Sbjct 120278566 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATTGTCTAACAA 120278622 >seq240 Length=107702431 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/86 (81%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 |||||||||||| |||||| ||||||||||| ||||| || |||| | | |||| Sbjct 43810404 TTCCCTTGGCTGAGGTTTCACTAGATAGTAGGTAGGGACAGTGGGGATCTTGATCATCCA 43810345 Query 25964 TTCATGCGCGTCACTAATTAGATGAC 25989 |||||||| ||||||||||| ||||| Sbjct 43810344 TTCATGCGTGTCACTAATTAAATGAC 43810319 >seq84 Length=50890351 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCGTTAATCCT 25963 |||| |||||||||||||| || ||||| || ||||| ||| ||||||| | |||| Sbjct 21350893 TTCCTTTGGCTGTGGTTTCACTGGATAGCAGGTAGGGACGGTGAGAATCTCGCTCATCCA 21350952 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||| ||||||||||||||| || Sbjct 21350953 TTCATACGCATCACTAATTAGATGAGGA 21350980 Score = 82.4 bits (90), Expect = 5e-11 Identities = 67/79 (85%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTAT--CGGTCTC 20004 |||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||| Sbjct 21556610 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATTGCGGTCTC 21556669 Query 20005 GCGGTAATATTTAGCCTTA 20023 | | |||||| ||||| Sbjct 21556670 -CTGCTGTATTTAACCTTA 21556687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939019333324