Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq423 262 5e-65 seq1 120 4e-22 seq113 111 2e-19 seq240 96.9 4e-15 seq127 84.2 3e-11 >seq423 Length=130038232 Score = 262 bits (290), Expect = 5e-65 Identities = 423/603 (70%), Gaps = 15/603 (2%) Strand=Plus/Plus Query 32646 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 32705 || || ||||||| || || ||||| ||||||| |||||| ||||| || || | ||| Sbjct 41478068 TGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCA 41478127 Query 32706 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 32765 |||||||| ||||| || ||||| || || || || || ||||| ||||| || ||||| Sbjct 41478128 TTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAA 41478187 Query 32766 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---A 32822 | |||||||||| | ||||| |||| |||||| | | || | || ||||| | Sbjct 41478188 TAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTA 41478244 Query 32823 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 | | |||| ||||| | |||||||| ||||||||||| ||||||||||| Sbjct 41478245 GCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATC 41478304 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || || ||||| ||| || | | |||| || |||||| | || || ||| | Sbjct 41478305 GTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTA 41478364 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | | |||||||||| | ||||| |||||||| ||||| ||||| || || |||| || Sbjct 41478365 AGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 41478424 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || || || | ||| |||||| | |||||| || | || ||| |||| ||||| Sbjct 41478425 CGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATG 41478484 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || ||||| || ||||| || ||| ||||| |||||||| | | || || || | Sbjct 41478485 CCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTC 41478543 Query 33123 AGTTTATTCCAATCATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 || ||||| || || || || || || | ||||| || || ||||| || Sbjct 41478544 AG-GGATTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAA 41478599 Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 33238 || || || ||||| ||| |||| | |||||| ||||| || | | || || || || Sbjct 41478600 GGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGATGAC 41478659 Query 33239 AAA 33241 ||| Sbjct 41478660 AAA 41478662 Score = 206 bits (228), Expect = 3e-48 Identities = 319/450 (71%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 ||||||| |||||| || || ||||| | ||| ||| |||| ||||| || ||||| || Sbjct 119131877 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGGCCAGGCATCAGT 119131818 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 119131817 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 119131758 Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 32848 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 119131757 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 119131698 Query 32849 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 119131697 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 119131640 Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 119131639 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 119131582 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 |||||| || || ||||| || || |||||||| | || |||||||| | |||| Sbjct 119131581 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 119131522 Query 33029 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088 | |||| |||| | | ||||||| ||||| || |||| |||||||| || |||| Sbjct 119131521 AACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 119131462 Query 33089 TACATGTTTTATAAAATATTTTTCGTCTGG 33118 | || |||||||||| |||| || || Sbjct 119131461 AATATAGGATATAAAATATCTTTCCTCAGG 119131432 >seq1 Length=126035930 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| |||||| |||||||| ||||| || || || || || ||||| || | || || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 62611399 CTGTTTCTTATACCATA 62611415 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 62622018 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 62622077 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 62622078 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 62622137 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 62622138 AGGCTCCAGGTAAATAGC 62622155 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||||| || || || || || || || || || | Sbjct 62638621 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 62638680 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 62638681 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 62638740 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 62638741 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 62638786 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || |||||||| ||||||||| Sbjct 62631911 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAAC 62631970 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| |||||||| || ||||| |||| || || || || || || Sbjct 62631971 CACCTCTCAGAAAGAAGATTGTATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATC 62632030 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| || || ||||||||| Sbjct 62632031 CCAACAGATACTCTCATCAACATATGTTGTGGTCTTTCA 62632069 >seq113 Length=139301422 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 97069849 >seq240 Length=107702431 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 32923 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 32982 |||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 32983 TTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 |||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 >seq127 Length=125710982 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 30452 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 30511 ||| ||||||| | |||||||||| | || |||| | || ||||| || |||| ||| Sbjct 85916321 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATC 85916380 Query 30512 CCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 30571 ||| | || || | || | ||| ||| |||| || | || || | |||||| Sbjct 85916381 ACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCC 85916440 Query 30572 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 30610 ||||||||||| ||||| ||||| |||||| |||||| Sbjct 85916441 TCTATAATCTTCATCTATGACACCAGCTCCTACATCAAT 85916479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616127518400