Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq247 116 3e-21 seq223 116 3e-21 seq98 102 7e-17 >seq247 Length=91754291 Score = 116 bits (128), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | || || ||| ||||||| |||| || | Sbjct 30514850 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCG 30514791 Query 25051 AGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 || | |||||| || ||| | || |||| |||| ||| ||||| || || || | Sbjct 30514790 AGCCCAGTGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCC 30514734 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||||||||| ||||| | || |||||||||||||| | ||||||| |||||| | Sbjct 30514733 CACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCT 30514674 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || ||||| || || ||||| ||||| || || Sbjct 30514673 CAGACTACAACATCCAGAAAGAGTCCACCCTGCA 30514640 >seq223 Length=128539186 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| |||| |||||| | | Sbjct 120278384 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 120278325 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| ||| ||| || || ||||| || || ||||||||| Sbjct 120278324 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAA 120278265 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| | ||||||| ||||| || || ||||| Sbjct 120278264 CAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 120278205 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 120278204 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGCCTCAGAGGTGG 120278158 >seq98 Length=135778131 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| | ||| | | || ||| ||||||| | || || | Sbjct 37173731 ACGCAAACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCG 37173790 Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || | |||||| || ||| ||| |||| |||| ||| ||||| || || || Sbjct 37173791 AGCCCAGTGACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATC 37173846 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||||||||| ||||| | || |||||||||||||| | ||||||| |||||| | Sbjct 37173847 CCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTC 37173906 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 | ||||| || || ||||| |||||||| || Sbjct 37173907 TCAGGCTACAACATCCAGAAAGAGTCCACGCTGCA 37173941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317416505260