Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25]
2,004 sequences; 2,789,656,328 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq247 116 3e-21
seq223 116 3e-21
seq98 102 7e-17
>seq247
Length=91754291
Score = 116 bits (128), Expect = 3e-21
Identities = 156/214 (73%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
||| || ||||| || ||||| ||||| | || || ||| ||||||| |||| || |
Sbjct 30514850 ACGCAAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCG 30514791
Query 25051 AGTCGTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTC 25107
|| | |||||| || ||| | || |||| |||| ||| ||||| || || || |
Sbjct 30514790 AGCCCAGTGACACCATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCC 30514734
Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167
|||||||||| ||||| | || |||||||||||||| | ||||||| |||||| |
Sbjct 30514733 CACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCT 30514674
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|| ||||| || || ||||| ||||| || ||
Sbjct 30514673 CAGACTACAACATCCAGAAAGAGTCCACCCTGCA 30514640
>seq223
Length=128539186
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| |||| |||||| | |
Sbjct 120278384 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 120278325
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| | ||| ||| ||| || || ||||| || || |||||||||
Sbjct 120278324 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCAA 120278265
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || ||||| | ||||||| ||||| || || |||||
Sbjct 120278264 CAGAGGTTGATCTTTGCTGGAAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 120278205
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || ||||| ||||| || || | ||||| | || ||||| ||
Sbjct 120278204 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGCCTCAGAGGTGG 120278158
>seq98
Length=135778131
Score = 102 bits (112), Expect = 7e-17
Identities = 153/215 (71%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
||| || ||||| || ||||| | ||| | | || ||| ||||||| | || || |
Sbjct 37173731 ACGCAAACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCG 37173790
Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106
|| | |||||| || ||| ||| |||| |||| ||| ||||| || || ||
Sbjct 37173791 AGCCCAGTGACACCATTGAGAACGTCA---AAGCCAAAATTCAA-GACAAGGAGGGTATC 37173846
Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166
||||||||||| ||||| | || |||||||||||||| | ||||||| |||||| |
Sbjct 37173847 CCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTC 37173906
Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
| ||||| || || ||||| |||||||| ||
Sbjct 37173907 TCAGGCTACAACATCCAGAAAGAGTCCACGCTGCA 37173941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433317416505260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |