Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq423 242 4e-59 seq240 96.9 4e-15 >seq423 Length=130038232 Score = 242 bits (268), Expect = 4e-59 Identities = 444/646 (69%), Gaps = 6/646 (1%) Strand=Plus/Plus Query 93061 TGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTC 93120 |||||| ||||| | | |||| |||| | ||| ||||| || |||||||| || || Sbjct 41478052 TGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATC 41478111 Query 93121 TCGTGAT-ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 || || | || | |||||| ||||| | || || | |||||||||||||||||||| Sbjct 41478112 TC-TGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCC 41478170 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || |||||| ||||||||| | | |||||| | || ||||| | |||| Sbjct 41478171 AGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAA 41478227 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 |||||| || | | || || || | ||||| | || |||||||| || || | Sbjct 41478228 CACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCT 41478287 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 | || | |||||| | ||||| || || || || | | || | || | | |||| Sbjct 41478288 TTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTT 41478347 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 |||||| || || | | | | ||||||| ||||||| | || ||||| ||||||| Sbjct 41478348 TTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTT 41478407 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || ||||||| | ||||| || | ||| |||||||| ||||| ||| || | Sbjct 41478408 GGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCA 41478467 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||| |||| ||||| ||||| ||| ||||| ||| ||| | ||| |||||||| Sbjct 41478468 AGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAAT 41478526 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTT 93599 | |||| || || || ||||| | | | || || || || || || || | Sbjct 41478527 CTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCT 41478586 Query 93600 CGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAA 93659 || ||||| || || ||||| || || || |||| | ||| || || || || | Sbjct 41478587 CGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGT 41478646 Query 93660 TTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || || ||||||||||| | ||| ||| | || | |||||| Sbjct 41478647 TGGGGAAGATGACAAAACGGCAGGCGTTTTCTCTCAGCAGCGGCTC 41478692 Score = 147 bits (162), Expect = 2e-30 Identities = 312/461 (68%), Gaps = 5/461 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 119131890 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGAAAAATGTGA 119131832 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| |||||| ||||||||| | Sbjct 119131831 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGA 119131772 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | | | |||||| ||||| || ||| |||||| || | || || | | Sbjct 119131771 AGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 119131712 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| || ||||| | || || ||||| | ||| || | |||||| || || | Sbjct 119131711 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 119131653 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | || | || | |||| |||| ||| | || | ||| || | Sbjct 119131652 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGTGTGT--CAATAAGGAGACTATTTA 119131595 Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 | |||||||| | || || || ||||||||||| || ||||| || | ||| || | Sbjct 119131594 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 119131535 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 |||| | ||||||| |||| || || || ||||||| ||||| ||||| |||||| Sbjct 119131534 TCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTG 119131475 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 |||| ||||||| |||| |||||||| | | || ||| Sbjct 119131474 CAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 119131434 >seq240 Length=107702431 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 97515005 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 97515064 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 97515065 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACGTTC 97515117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 93361 TATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTG 93420 |||||| || || || | ||| ||||||||||||||| | || ||||| |||||||| Sbjct 97517463 TATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 97517522 Query 93421 GAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| || Sbjct 97517523 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCAC 97517579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846850636960