Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq247 159 3e-34 seq98 141 8e-29 seq223 118 9e-22 seq227 114 1e-20 seq422 100 2e-16 seq113 96.9 3e-15 seq368 95.1 1e-14 seq77 89.7 4e-13 >seq247 Length=91754291 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| || || || || | Sbjct 30514846 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCC 30514787 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||||||||||||||||||||| ||||| || Sbjct 30514786 CAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 30514727 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 30514726 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 30514667 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 30514666 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 30514616 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 72049577 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTTAAGCCCA 72049636 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 72049637 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 72049696 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 72049697 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 72049756 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| ||||| |||||| | || | || |||| |||| || || Sbjct 72049757 ACATCTGGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG 72049805 >seq98 Length=135778131 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| | || | | || ||||| |||| ||||| || || | Sbjct 37173735 AAACATGCAGATCTTTGTGACGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCC 37173794 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || | ||||| ||||||||||||||||||||||| ||||| || Sbjct 37173795 CAGTGACACCATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 37173854 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| | || Sbjct 37173855 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGGCTA 37173914 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGG 22442 |||||| || ||||| ||||| | || | || ||||| |||| || Sbjct 37173915 CAACATCCAGAAAGAGTCCACGCTGCACCTGGTGTTGCGCCTGCGAGG 37173962 >seq223 Length=128539186 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || ||| | | || || || |||| ||||| ||||| ||| Sbjct 110883328 AGATGCAGATCTTTGTGAACACTCTCATGGGCAAGACCATCACCCTTGAGGTGGAGCCCA 110883269 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| |||| |||||||||||||| || | || || | Sbjct 110883268 GTGACACCACTGAGAATGTCAAAGCCGAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 110883209 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| |||||||| ||||||||| ||||||| ||||| |||| || || | Sbjct 110883208 ACCAGTGTCTGATATTTGCGGGCAAACAGCCAGAGGATGGCCGCAGTCTCTCAGACTAGA 110883149 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 110883148 ACATCCAGAAAGAGTCCACC 110883129 >seq227 Length=108555830 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || || ||| ||||| || || ||| Sbjct 57866933 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 57866874 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| |||||||||||| | |||||||| ||||| || || Sbjct 57866873 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACGAAGAGGGTATCCCACCTGACCAG 57866814 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| |||||||| ||||| ||| | |||||| | |||| |||| || |||||| Sbjct 57866813 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 57866754 Query 22399 ATTCAAAAAGAATCCACC 22416 || |||||| | |||||| Sbjct 57866753 ATCCAAAAACAGTCCACC 57866736 >seq422 Length=24206276 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 21869592 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCATCCCAGT 21869651 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || || ||||| || || || ||||||||||| || ||||| || || Sbjct 21869652 GACACCAGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCAG 21869711 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 21869712 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 21869771 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 21869772 ATCCAGAAAGAGTCCACC 21869789 >seq113 Length=139301422 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 117814031 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 117814090 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || ||||||| || ||||| |||| Sbjct 117814091 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACAGCCAGAAAGAGCCCAC 117814143 >seq368 Length=84932903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/129 (77%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGA-GGGTATTCCACCCGATCAACAACGTCTTATA 22350 || ||||| ||||||||||||||||| |||||| ||||| || || | ||||| ||| Sbjct 35333688 ATGTCAAAGCCAAAATTCAAGACAAGGAGGGGTATCCCACCTGACCAGTAGCGTCTGATA 35333747 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 |||| || |||||| | ||| || | |||| |||| | |||||||| || ||||| Sbjct 35333748 CTTGCTGGGAAACAGCTGGAGAATGGCTGCACTCTCTCAGGCTACAACATCCAGAAAGAG 35333807 Query 22411 TCCACCATA 22419 |||||| || Sbjct 35333808 TCCACCCTA 35333816 >seq77 Length=75399963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||| |||| || | ||| || || || |||| ||| || |||||| Sbjct 34143304 AAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTGTCTGATAATTTGAGGCAAA 34143245 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 || | |||||| |||||| |||| || |||||||| || ||||| |||||| Sbjct 34143244 TAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACC 34143191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717748668260