Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq98 109 5e-19 seq68 105 6e-18 seq253 102 7e-17 seq223 98.7 8e-16 seq11 87.8 2e-12 seq227 86.0 5e-12 >seq98 Length=135778131 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 2002795 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 2002736 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 2002735 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2002676 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| | Sbjct 2002675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACC 2002616 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 2002615 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2002568 >seq68 Length=92142175 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 7889864 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 7889805 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 7889804 AAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 7889745 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 7889744 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 7889685 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | | || || || || ||||| || ||||||||||| Sbjct 7889684 CTCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7889637 >seq253 Length=75148670 Score = 102 bits (112), Expect = 7e-17 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 ||||| |||||||| || ||||| | ||||| ||||||||||| ||||| ||| | Sbjct 9604671 CCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTA----GTCAAA 9604616 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| ||||| || ||||| || | || | ||| || | |||||||| Sbjct 9604615 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGTTCAGTCTCTGCTGACCGGGAGGAATT 9604556 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || | ||||| |||| | || | || || | || ||| || || Sbjct 9604555 CCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCG 9604496 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || || || ||||| || ||||||||||| Sbjct 9604495 AGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 9604452 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 15279450 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCC 15279509 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || || ||||||||||| || ||||| || Sbjct 15279510 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 15279569 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 15279570 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 15279629 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 15279630 TTCACGAAGATCTGCAT 15279646 >seq223 Length=128539186 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || || || || Sbjct 120278416 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 120278475 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||| ||||| |||||| || Sbjct 120278476 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 120278535 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || || | ||| | || ||||| |||||||| Sbjct 120278536 ACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTC 120278595 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 120278596 TTCACGAAGATCTGCAT 120278612 >seq11 Length=90373283 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || ||||||||||||||||| Sbjct 26593018 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATC--- 26593074 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 26593075 ---AG-AC----ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 26593126 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || || || |||| | ||| |||| || ||| || Sbjct 26593127 AATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAAC 26593186 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 26593187 CTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 26593234 >seq227 Length=108555830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 68205691 ACCACCATGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 68205750 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 68205751 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 68205810 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA-ACGGTGTCGGTGGATTCGA 114333 ||| ||||| || | |||| |||| | || | | || || | || ||| Sbjct 68205811 AATTCCTTCCTTATTCTGGATCTCGGCCTTTACATTTTTATATCGTATCCGAGGGTTCAG 68205870 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | || || || || || ||||| | ||||||||||| Sbjct 68205871 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 68205919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124138742448