Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq423 123 5e-23 seq240 84.2 4e-11 seq113 84.2 4e-11 >seq423 Length=130038232 Score = 123 bits (136), Expect = 5e-23 Identities = 389/588 (66%), Gaps = 26/588 (4%) Strand=Plus/Minus Query 42287 CGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGA 42346 |||| |||| || |||||| |||| ||||||||| | ||| ||||||| |||| Sbjct 41478645 CGAGTACCATGATATCTGGCAGATGTGTAAGAAGGCGGAAGCTTCCTTCTGGACCTCCGA 41478586 Query 42347 GGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACGAA 42401 |||| | |||||| ||||||||| ||| |||||| || ||| | ||| | || Sbjct 41478585 GGAGGTGGACCTGTCCAAGGACATTTGGCA--CTGGGAATCCCTGAAGCCCGAGGA-GAG 41478529 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 41478528 AGATTTTATATCCCATG--TTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCA 41478472 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||| ||| | || | |||| || ||| || || ||||| |||| ||| Sbjct 41478471 AACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGGTGACAGAAGCCCGCTGTTTCTGTGGC 41478412 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG----CCAAACTGCTCAACAC 42577 ||||| || ||||| || ||| | || |||| |||| || |||| |||| Sbjct 41478411 TTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTACTG----ACAC 41478356 Query 42578 GTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTG 42637 ||||| |||||| || | | | ||||| ||||| || |||||||| || Sbjct 41478355 TTACATAAAAGATCCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTG 41478296 Query 42638 CATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC-GCAACGTTCG 42696 |||| |||||||| || ||||| | ||||||| | | | | | || || | | Sbjct 41478295 TGTCAAAAAGAAGGCAGATTGGGCCTTGCACTGGATTGGG-GACAAATCAGCTACCTATG 41478237 Query 42697 GCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCT 42756 | || | | |||| |||| | || | || |||||||| |||| || || || | Sbjct 41478236 GGGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCATCTT-TTCT--GGTTATTTTGCAT 41478180 Query 42757 CCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || |||||||||||| | ||| | |||||| || ||||| || || || ||||| Sbjct 41478179 CGATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTT 41478121 Query 42816 ATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||||| || ||||| | || | || ||||| ||||| ||||| Sbjct 41478120 ATCAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 41478073 >seq240 Length=107702431 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 97515108 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 97515049 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 97515048 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 97514990 Query 42827 CGAGG 42831 |||| Sbjct 97514989 TGAGG 97514985 >seq113 Length=139301422 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 97069854 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 97069795 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 97069794 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 97069736 Query 42825 GACGA 42829 || || Sbjct 97069735 GATGA 97069731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944315544303040