Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq98 132 1e-25 seq68 132 1e-25 seq223 131 4e-25 seq253 123 6e-23 seq247 114 3e-20 seq373 107 5e-18 seq423 95.1 3e-14 seq201 93.3 1e-13 seq315 89.7 1e-12 seq11 87.8 4e-12 >seq98 Length=135778131 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 2002794 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 2002735 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 2002734 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2002675 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| | Sbjct 2002674 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACCC 2002615 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 2002614 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 2002564 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || || || | |||| ||||| ||||| || ||| | | ||| ||||| || ||||| Sbjct 37173947 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCTTCC 37173888 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || || ||||||||||| || | |||||| || || || || || Sbjct 37173887 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 37173828 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| ||||| || || | || || | || || || || ||||| || || Sbjct 37173827 ATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTG 37173768 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || ||| | || || |||||||| Sbjct 37173767 CCCGGGAGGGTCGTCACAAAGATCTGCAT 37173739 >seq68 Length=92142175 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 7889863 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAA 7889804 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 7889803 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 7889744 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 7889743 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 7889684 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| ||||||| || || || || ||||| ||||||||| || Sbjct 7889683 TCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 7889633 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 62819021 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 62818962 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | | | ||||| ||| || || || |||||| | || |||| | || Sbjct 62818961 AAAGTCCATGCATCTTCCCGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAGGA 62818902 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| | || || || |||||||| | ||| | ||| || Sbjct 62818901 ATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAACA 62818842 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| | || || || | ||| ||||||||| || Sbjct 62818841 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTTG 62818791 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 5/189 (3%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | || ||| | | ||||| | || || |||| ||||| Sbjct 66108911 CTTTCTGGATTTTGTAGTCAGAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGTGAAGA 66108852 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || | ||| || | | ||||| |||||||||||||||| || | |||||| |||| Sbjct 66108851 TGAGCCTCTGCTG-GTCTTGGGGATGTCTTCTTTATCCTGGATCTT-GGTTTCACATTTT 66108794 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || || || || || || || |||| ||||| || || || ||||| || | Sbjct 66108793 CAATGCTGTCACT---GTCAACCTCCAGGGTGACGGTCTTGCCAGTGAGCGTCTTCACAA 66108737 Query 288464 ATATCTGCA 288472 | ||||||| Sbjct 66108736 AGATCTGCA 66108728 >seq223 Length=128539186 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| ||||| ||||| || ||||| | Sbjct 120278158 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278217 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||||| || ||||||| | |||||| | ||| Sbjct 120278218 AGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGG 120278277 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || || || || || || | || || | || || Sbjct 120278278 ATGCCTTCCTTATCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 120278337 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 120278338 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278384 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || ||||| || ||| Sbjct 120278422 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 120278481 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || || || ||||| || |||||||| || || || || ||| Sbjct 120278482 ATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTT 120278541 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||||||||| ||| Sbjct 120278542 TCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACG 120278601 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 120278602 AAGATCTGCATT 120278613 >seq253 Length=75148670 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || || || ||| Sbjct 15279456 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAG 15279515 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || ||||| ||| Sbjct 15279516 ATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTT 15279575 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 15279576 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 15279635 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 15279636 AAGATCTGCAT 15279646 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 15288078 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 15288137 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| |||||||||||||| || ||||| Sbjct 15288138 ATAAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 15288194 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 15288195 TTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 15288254 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 15288255 ACGAAGATCTGCATTTTG 15288272 >seq247 Length=91754291 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||||| || ||||| | ||||| || || || Sbjct 30514652 TCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAT 30514711 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || || ||||| ||||| || || Sbjct 30514712 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTC 30514771 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || ||||| ||||| || || || || || ||||| || Sbjct 30514772 TCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACA 30514831 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 30514832 AAGATCTGCAT 30514842 >seq373 Length=85787240 Score = 107 bits (118), Expect = 5e-18 Identities = 144/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || ||||| | || | ||||| || Sbjct 11745801 TTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCTGCAAA 11745742 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | ||| || || ||| || ||||| ||||||||||| || || ||||| Sbjct 11745741 GATGAGCCTCTGCTGG---TCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCTTCAC 11745685 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || || | || || || || ||||| ||||| | ||||| ||||| Sbjct 11745684 ATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTCTT 11745625 Query 288459 GACGAATATCTGCATTATG 288477 ||||| | ||||||| || Sbjct 11745624 CACGAAGACCTGCATTTTG 11745606 >seq423 Length=130038232 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || |||| | | || ||||||||||| | ||| | || || ||| Sbjct 2009450 TCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAG 2009391 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| ||||||||||| || || || || ||| Sbjct 2009390 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 2009331 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||| | ||| | ||| || || || |||||||||||| | | || || || | | Sbjct 2009330 TCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATCGTCTTCTCCCTTAGGGTTTTCATG 2009271 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 2009270 AAAATCTGCATTTTG 2009256 >seq201 Length=128595539 Score = 93.3 bits (102), Expect = 1e-13 Identities = 140/199 (70%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| | |||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 20552403 TCTTTCTGGATGTCATAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 20552462 Query 288343 ATCAGACGCTGTTGAGAAT--CTGGGATT--------CCTTCTTTATCCTGGATTTTCGC 288392 || || | ||| || | ||||| | ||||||||||||||||| || || Sbjct 20552463 ATGAGCCTCTGCTGGTCAGGGCTGGGGGTAGGGTGTGCCTTCTTTATCCTGGATCTTGGC 20552522 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 |||||| |||| || | || || | || ||||| | ||||| ||||| || |||| Sbjct 20552523 TTTCACATTTTTGATGGTGTCACTGGGCTCCACTTCCAAGGTGATGGTCTTGCCAATCAG 20552582 Query 288453 AGTCTTGACGAATATCTGC 288471 ||||| || || |||||| Sbjct 20552583 GGTCTTCACAAAGATCTGC 20552601 >seq315 Length=127223203 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||| | || || ||||| | Sbjct 125319228 CCACCAGGAAGTCTTAACACAAGATGAAGAGTGGGCTCCTTTCGAATGTTGTAGTCAGAC 125319169 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | | ||| ||||| | ||| || || || |||||||| | ||| | | | || Sbjct 125319168 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGA 125319111 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 125319110 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCACGGGTTCGACC 125319051 Query 288427 TCGAGCGTGATCGTCTTCCCGGT 288449 || || ||||| |||||||| || Sbjct 125319050 TCAAGGGTGATGGTCTTCCCCGT 125319028 >seq11 Length=90373283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 ||||| | ||| || || || |||||||| | || ||| | || |||||||| ||| Sbjct 26593080 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 26593139 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || |||||| | | | | ||| || || || ||||| Sbjct 26593140 TCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACCTCAAGGGTGATG 26593199 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||| || || || || ||||| ||||||||| Sbjct 26593200 GTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 26593235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179624110898712