Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq247 131 2e-25 seq223 114 1e-20 seq98 113 5e-20 seq253 111 2e-19 seq270 96.9 4e-15 seq299 95.1 1e-14 seq227 89.7 6e-13 seq201 84.2 2e-11 >seq247 Length=91754291 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 30514628 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 30514687 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 30514688 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 30514747 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| || | | ||||| || | || || |||| ||||| Sbjct 30514748 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 30514806 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 |||||||||||| || ||||| |||||||| ||||| || Sbjct 30514807 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 30514845 >seq223 Length=128539186 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||||| |||| ||| ||| || || || ||||| |||| | Sbjct 120278386 CCACCTCTGAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278445 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || |||||||| || || || || || | ||||||||||| || Sbjct 120278446 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 120278505 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| ||| |||| | | | ||||| || | || || Sbjct 120278506 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 120278565 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | |||||||| ||||| || || ||||| || ||||| |||||| || Sbjct 120278566 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATTGTC 120278616 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 91406471 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 91406412 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 91406411 TACTAACGAGGA 91406400 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 120291496 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120291555 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 120291556 TACTAACGAGGA 120291567 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 120296149 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120296208 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 120296209 TACTAACGAGGA 120296220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 93809843 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 93809784 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 93809783 ATACTAACGAGGAGTG 93809768 >seq98 Length=135778131 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||||||||| |||| ||| ||| || || || ||||| | | ||||| || | Sbjct 37173953 CGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCA 37173894 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || || || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 37173893 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 37173834 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 37173833 TCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 37173775 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||||||||||| || ||| | |||||||| ||||| || Sbjct 37173774 GGTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTT 37173736 >seq253 Length=75148670 Score = 111 bits (122), Expect = 2e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | |||| ||||| |||| || |||||| || || ||||| |||| Sbjct 15288041 ACCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 15288100 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || || || | ||||||||||| || Sbjct 15288101 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGG 15288160 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| |||||| || | | | | ||||| || | ||||| Sbjct 15288161 AATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 15288220 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 15288221 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 15288274 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 7592040 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 7592099 Query 57065 TATACTACCGAGGATTGA 57082 ||||||| |||||| ||| Sbjct 7592100 TATACTAACGAGGAGTGA 7592117 >seq270 Length=71996105 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 |||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 45018674 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 45018733 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 45018734 ACTATACTAACGAGGA 45018749 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||||||| Sbjct 44945861 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 44945802 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 44945801 ACTATACTAACGAGGA 44945786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | || ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 45040057 TCTCCCCGTCGGGGAACCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 45040116 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 45040117 ATACTAACGAGGA 45040129 >seq299 Length=130588469 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/100 (82%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2485589 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2485648 Query 57066 ATACTACCGAGGA----TTGAATATATAACTTGAATATTG 57101 |||||| |||||| || | || ||||||||| |||| Sbjct 2485649 ATACTAACGAGGACGACTTCAGAAT-TAACTTGAAAATTG 2485687 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2539618 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2539559 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2539558 TACTAACGAGGA 2539547 >seq227 Length=108555830 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| |||| ||| || ||||| || ||||| || | ||||| | | || || Sbjct 57866724 CACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTC 57866783 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| ||||| || ||||||||||| | ||| | | ||| | || | | Sbjct 57866784 CAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGT-CTT 57866842 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 || |||| | ||||| || | |||| || | || || || | ||||||| | Sbjct 57866843 GAATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCT 57866902 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| ||||||| ||||| Sbjct 57866903 TGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 57866933 >seq201 Length=128595539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||| ||||||||||||| |||||||||||||||||| |||||| Sbjct 31627486 AATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 31627428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199192519360