Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq223 136 4e-27 seq253 131 2e-25 seq98 111 2e-19 seq68 111 2e-19 seq373 109 5e-19 seq247 109 5e-19 seq11 96.9 3e-15 seq315 89.7 5e-13 seq227 86.0 6e-12 seq423 84.2 2e-11 >seq223 Length=128539186 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| |||||||| ||| Sbjct 120278416 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCG 120278475 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| ||||| || || || || ||| ||| Sbjct 120278476 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTG 120278535 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || || || || | || | ||||||||| |||| ||| Sbjct 120278536 ACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTC 120278595 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 120278596 TTCACGAAGATCTGCATT 120278613 >seq253 Length=75148670 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 15288072 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 15288131 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| ||||| ||||| || || || ||||| ||| Sbjct 15288132 GCAAAGATAAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 15288191 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 15288192 ACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 15288251 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 15288252 TTCACGAAGATCTGCATTTT 15288271 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 15279450 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCC 15279509 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| || || || |||||||| || || || || ||| Sbjct 15279510 GCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 15279569 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 15279570 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 15279629 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 15279630 TTCACGAAGATCTGCAT 15279646 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 ||||| || || ||||||||||| ||||| || | || || | ||||| || || Sbjct 9604651 ATGAAGAGTAGACTCTTTTTGAATATTGTAGTC----AAAGTACGTCCATCTTCCAGTTG 9604596 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||| ||| | | || | |||||| |||||||||||||||| || | || || || Sbjct 9604595 CTTGCCAGCAAAGTTCAGTCTCTGCTGACCGGGAGGAATTCCTTCCTTAACCTGGATCTT 9604536 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||||| | | ||||| || || || || | || | |||||| || || Sbjct 9604535 GGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGT 9604476 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 | ||||| |||||||| |||||||| Sbjct 9604475 AAGGGTTTTCACGAAAATCTGCATTTT 9604449 >seq98 Length=135778131 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 2002795 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 2002736 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 2002735 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2002676 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || | Sbjct 2002675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACC 2002616 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||| |||||||| |||||||| Sbjct 2002615 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2002565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | ||| || ||||| || |||||||| ||| || ||||| | ||||| Sbjct 37173948 CACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCTTC 37173889 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||||||| | || || ||||||||||| || || || || || || ||||| Sbjct 37173888 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 37173829 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| || ||| | || |||| || || || || | || | ||| | Sbjct 37173828 -AATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTT 37173770 Query 64413 TGCC 64416 |||| Sbjct 37173769 TGCC 37173766 >seq68 Length=92142175 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 7889864 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 7889805 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 7889804 AAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 7889745 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || | ||||| || || || Sbjct 7889744 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 7889685 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | | |||| || || | ||||| |||||||| |||||||| Sbjct 7889684 CTCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7889634 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||| ||||| || | Sbjct 62819022 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 62818963 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | || ||||| | |||||||| ||| | || | ||||| | ||||| Sbjct 62818962 CAAAGTCCATGCATCTTCCCGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAGG 62818903 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || | ||||||| || | ||||| || || || Sbjct 62818902 AATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCTGAGGGTTCAAC 62818843 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || | | ||||| | |||||| |||||||| Sbjct 62818842 ATCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 62818792 >seq373 Length=85787240 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| || |||||||| || | | ||||| | ||||| |||||| |||| Sbjct 11745806 GTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCT 11745747 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| |||||||||||| || ||||| || || || || || ||| Sbjct 11745746 GCAAAGATGAGCCTCTGCTGGTCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCTTC 11745687 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || ||||| || | || | ||||||| | |||| || Sbjct 11745686 ACATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTC 11745627 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| | |||||||| Sbjct 11745626 TTCACGAAGACCTGCATTTT 11745607 >seq247 Length=91754291 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || || | || || ||||| || |||||||| |||| || ||||| | ||||| Sbjct 30514633 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTC 30514692 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 ||||| ||||||||| | || || ||||||||||| || || || || || || ||||| Sbjct 30514693 CAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTG 30514752 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| ||| ||| | || |||| || || || || | || | ||| | Sbjct 30514753 -AATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTT 30514811 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||| || | || || || || || ||||| || Sbjct 30514812 TGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 30514845 >seq11 Length=90373283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/230 (69%), Gaps = 11/230 (5%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || ||||||||||||||||| | Sbjct 26593018 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCAGA 26593077 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| || |||||||| ||| | || || | ||||| || ||||| Sbjct 26593078 CA-----------TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 26593126 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || ||||||| || ||| | || || || Sbjct 26593127 AATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAAC 26593186 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 || | || | |||||| || || | ||||| |||||||| ||||||| Sbjct 26593187 CTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 26593236 >seq315 Length=127223203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || | || ||| |||||||||| || | || || | | Sbjct 125319217 TCTTAACACAAGATGAAGAGTGGGCTCCTTTCGAATGTTGTAGTCAG--ACAGTACATCC 125319160 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || ||||||||||||| || Sbjct 125319159 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGAATTCCTTGCTT 125319100 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || | ||||| ||| || || || | || | Sbjct 125319099 ATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCACGGGTTCGACCTCAAGGGTGAT 125319040 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| |||||| ||| |||| Sbjct 125319039 GGTCTTCCCCGTAA----TTTTATGAAAATCTGCGTTTT 125319005 >seq227 Length=108555830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64233 GCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTT 64292 |||| || || | || || | |||||| |||||||| |||| || |||| | || | Sbjct 57866723 GCACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCT 57866782 Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352 | ||||||||||| ||| | || || ||||||||||| || || || || |||| |||| Sbjct 57866783 CCAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGTCTT 57866842 Query 64353 GTATTTT 64359 | ||||| Sbjct 57866843 GAATTTT 57866849 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||| ||||| || | | || || | Sbjct 68205703 TCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCC 68205762 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | ||||| || |||||||||||||| || Sbjct 68205763 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 68205822 Query 64348 TTCTTGTATTTTTTGCTTTACA-ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 | || || | ||||||| | | ||||| || || | || | || | Sbjct 68205823 ATTCTGGATCTCGGCCTTTACATTTTTATATCGTATCCGAGGGTTCAGCCTCGAGGGTGA 68205882 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || || | ||||| | |||||| |||||||| Sbjct 68205883 TGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 68205922 >seq423 Length=130038232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| || | || |||||||||||| | || | | || || ||||||| || Sbjct 2009465 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGT 2009406 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 |||| ||| ||| | || || | ||||| || |||||||||||||| || || || || Sbjct 2009405 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 2009346 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||||| || || || || | || | ||||| | Sbjct 2009345 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATCGTCTTCTCC 2009286 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | | ||||| | |||||| |||||||| Sbjct 2009285 CTTAGGGTTTTCATGAAAATCTGCATTTT 2009257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499632283897760