Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25]
2,004 sequences; 2,789,656,328 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq247 105 7e-18
seq223 93.3 4e-14
seq1 82.4 8e-11
>seq247
Length=91754291
Score = 105 bits (116), Expect = 7e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||||||| ||||| || | || | | | ||||| || || |||||||||||
Sbjct 30514615 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 30514674
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || || || ||||| |||| | | || |||||||| ||||| || ||
Sbjct 30514675 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 30514734
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| |
Sbjct 30514735 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||||| || | ||||| || || || || || ||||| |||||||||
Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 30514843
>seq223
Length=128539186
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || || ||| || || || || || |||| |
Sbjct 120278419 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 120278478
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| ||||| || ||||| ||||| ||| ||| || |
Sbjct 120278479 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 120278538
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | |||||| | | ||| ||||| | || | || || ||||||||||| ||
Sbjct 120278539 TTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 120278598
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 120278599 ACGAAGATCTGCAT 120278612
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || | ||| |||| || || || | | ||||| || || ||||||||||| |
Sbjct 120277930 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120277989
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || || ||||| || | | |||| | | ||| ||||| |||||
Sbjct 120277990 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 120278049
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| ||| || | | || | ||||||| | | |||||||
Sbjct 120278050 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 120278109
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || |||||||| || || || || ||||||||
Sbjct 120278110 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278156
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || || ||| || || || ||||| || | |
Sbjct 120278191 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCA 120278250
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||||||||| ||||| || ||||| || || ||| ||| || |
Sbjct 120278251 AAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACA 120278310
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||||| || | || || |||||||| || ||
Sbjct 120278311 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 120278370
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 120278371 ACGAAGATCTGCAT 120278384
>seq1
Length=126035930
Score = 82.4 bits (90), Expect = 8e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699
|||||| ||| || || | ||| |||||||||||||| ||| |||| || ||||| |
Sbjct 62620387 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 62620446
Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|||| || ||||| || | |||||| ||||||| |||||
Sbjct 62620447 TGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGG 62620486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496249968626880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |