Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq247 105 7e-18 seq223 93.3 4e-14 seq1 82.4 8e-11 >seq247 Length=91754291 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 30514615 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 30514674 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || ||||| |||| | | || |||||||| ||||| || || Sbjct 30514675 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 30514734 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||| | Sbjct 30514735 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | ||||| || || || || || ||||| ||||||||| Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 30514843 >seq223 Length=128539186 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || || || |||| | Sbjct 120278419 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCA 120278478 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||| ||||| ||| ||| || | Sbjct 120278479 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACA 120278538 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||| | || | || || ||||||||||| || Sbjct 120278539 TTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 120278598 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 120278599 ACGAAGATCTGCAT 120278612 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || || || | | ||||| || || ||||||||||| | Sbjct 120277930 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120277989 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| | | ||| ||||| ||||| Sbjct 120277990 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 120278049 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||||||| | | ||||||| Sbjct 120278050 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACC 120278109 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || |||||||| || || || || |||||||| Sbjct 120278110 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278156 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || ||||| || | | Sbjct 120278191 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCCAGCA 120278250 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||||||||| ||||| || ||||| || || ||| ||| || | Sbjct 120278251 AAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTTGACA 120278310 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||||| || | || || |||||||| || || Sbjct 120278311 TTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 120278370 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 120278371 ACGAAGATCTGCAT 120278384 >seq1 Length=126035930 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| || || | ||| |||||||||||||| ||| |||| || ||||| | Sbjct 62620387 TGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 62620446 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 |||| || ||||| || | |||||| ||||||| ||||| Sbjct 62620447 TGCTCTTTCGATTACAGGAATCTTTGTAGAGCATATACGG 62620486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496249968626880