Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq247 120 2e-22 seq253 96.9 2e-15 seq98 91.5 1e-13 seq68 91.5 1e-13 seq11 91.5 1e-13 >seq247 Length=91754291 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| | || || | || ||||| || ||||| || |||||||| || Sbjct 30514614 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 30514673 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 |||| | | | ||||| | |||||||| || |||||| |||||| ||||| || Sbjct 30514674 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 30514733 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||||||| ||| ||| | || || || || || || | Sbjct 30514734 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 | || | ||| |||||||| || || || || || ||||| || ||||| |||| Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTG 30514847 >seq253 Length=75148670 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14951 CACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGA 15010 |||| || | ||| || || |||||||| ||||| |||||||| || ||||| || | Sbjct 9604673 CACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTC----A 9604618 Query 15011 GAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAA 15070 | | | | ||||| | ||| |||||||| | ||| | ||| || || |||| Sbjct 9604617 AAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGTTCAGTCTCTGCTGACCGGGAGGAA 9604558 Query 15071 TTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGT 15130 |||||||||| | || ||| |||||| ||| ||| ||||| ||| || | Sbjct 9604557 TTCCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCT 9604498 Query 15131 CTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || ||||| || ||||| || ||||| ||||| || Sbjct 9604497 CGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 9604449 >seq98 Length=135778131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 2002794 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 2002735 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 2002734 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2002675 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| | Sbjct 2002674 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACCC 2002615 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 2002614 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2002565 >seq68 Length=92142175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 7889863 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAA 7889804 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 7889803 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 7889744 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 7889743 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 7889684 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||| | || || || || ||||| || ||||| ||||| || Sbjct 7889683 TCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7889634 >seq11 Length=90373283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| ||||||||||| Sbjct 26593019 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATC---- 26593074 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 26593075 AGA-------CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 26593127 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | || | ||| || Sbjct 26593128 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTGTTGTGTTCAAGGGTTCAACC 26593187 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 26593188 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 26593234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357383271147140