Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq247 136 4e-27 seq223 123 3e-23 seq253 120 3e-22 seq98 120 3e-22 seq373 102 9e-17 seq68 89.7 6e-13 >seq247 Length=91754291 Score = 136 bits (150), Expect = 4e-27 Identities = 172/235 (73%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 30514614 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 30514673 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| |||||||| ||||||| ||||||||||| | | Sbjct 30514674 AGAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 30514733 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| || | || | Sbjct 30514734 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 30514793 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 | || | ||||||||||||||||| || || || |||||||| ||||| ||||| Sbjct 30514794 CCTCGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGC 30514848 >seq223 Length=128539186 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| |||||||| || Sbjct 120278386 CCACCTCTGAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278445 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || |||||||| ||||| || |||| | ||||||||||| || Sbjct 120278446 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 120278505 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||||| | | | ||||| || | || || Sbjct 120278506 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 120278565 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| ||||| ||||| || || || ||||| |||||| Sbjct 120278566 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 120278613 >seq253 Length=75148670 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| |||| |||| || |||||| ||||| |||||||| || Sbjct 15288042 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15288101 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 15288102 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGA 15288161 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| ||| || ||| | | | | ||||| || | ||||| Sbjct 15288162 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15288221 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| ||||| || || || ||||| ||||||||| Sbjct 15288222 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 15288272 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || |||||| ||||| |||||||| || Sbjct 15279419 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 15279478 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 15279479 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGG 15279538 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 15279539 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 15279598 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 15279599 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15279646 >seq98 Length=135778131 Score = 120 bits (132), Expect = 3e-22 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| |||| || ||| || ||||| |||||| | || |||||||| | Sbjct 37173953 CGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCA 37173894 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| |||||||| ||||||| ||||||||||| | || | | ||||||| Sbjct 37173893 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 37173834 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || || |||| || | | ||||| || | || || || | |||||| Sbjct 37173833 TCTTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 37173774 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 |||||||||| || || | |||||||| ||||| ||||| Sbjct 37173773 GTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTTTGC 37173733 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 2002780 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 2002721 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||||| || | || | | ||||| || Sbjct 2002720 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2002661 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| | || | |||||||| Sbjct 2002660 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACCCTCGAGGGTGATGGT 2002601 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| || || || ||||||||| Sbjct 2002600 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 2002564 >seq373 Length=85787240 Score = 102 bits (112), Expect = 9e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| ||||| | |||| ||||| |||| || || || ||||| |||||||| || Sbjct 11745837 GCCACCTCTCAGACGCTGGACCAGGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCAGA 11745778 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||| |||| || || || | | ||||||||||| || Sbjct 11745777 AAGAGTGCGGCCATCTTCCAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGG--GG 11745720 Query 46486 C--ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 | | || ||||| ||| ||| || ||| | | | | ||||| || | ||| Sbjct 11745719 CAGATGCCTTCCTTATCCTGGATATTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 11745660 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||| | |||||||| ||| | ||||| || || || |||| ||||||||| Sbjct 11745659 ACATCAAGGGTGATGGTCTTGTCAGTCAGGGTCTTCACGAAGACCTGCATTTTG 11745606 >seq68 Length=92142175 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 7889849 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGTCCATC 7889790 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || |||||||| || || |||| | ||||| || | || | | ||||| || Sbjct 7889789 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7889730 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| || || | |||||| | Sbjct 7889729 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGAT 7889670 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| || || || ||||||||| Sbjct 7889669 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 7889633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565224240778080