Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq280 95.1 1e-14 seq270 86.0 5e-12 >seq280 Length=117593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| || | ||| || | | |||| Sbjct 113639 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCTG 113698 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || || | | || Sbjct 113699 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 113758 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | ||| ||||| |||| || || |||||||| |||||||| || Sbjct 113759 TTTGGTCCTCCCCATCCAGCTGCCAGGTTAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 113818 Query 529 CCCAACA 535 |||| || Sbjct 113819 CCCAGCA 113825 >seq270 Length=71996105 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||| | ||||| | | |||||| | | |||| Sbjct 41943925 CCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCACAGCTG 41943984 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| || || || ||||| ||||| || ||| | | | Sbjct 41943985 CCCACTTCTGGAAAGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 41944044 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 41944045 TCTGGTCCTCCCCATCCCGCTGCCAGGTCACTGTGATCTCCGCAGGGTAGAAGCCCAGGG 41944104 Query 529 CCCAACA 535 |||| || Sbjct 41944105 CCCAGCA 41944111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397737485521824