Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq247 154 1e-32 seq98 138 7e-28 seq223 129 4e-25 seq315 104 2e-17 seq422 102 5e-17 seq253 91.5 1e-13 seq227 89.7 3e-13 seq84 84.2 1e-11 >seq247 Length=91754291 Score = 154 bits (170), Expect = 1e-32 Identities = 166/218 (76%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 30514630 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 30514689 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 30514690 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 30514749 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || |||||| || || || | |||| || ||| || |||| ||| ||| Sbjct 30514750 TTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATG 30514807 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| |||||||| |||||||||||||||||||| || Sbjct 30514808 GTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 30514845 Score = 114 bits (126), Expect = 8e-21 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||| |||| ||||| || || |||| |||| ||| Sbjct 72049787 ACCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATCCTCC 72049728 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||||| ||| || | |||||||| | || | ||||||||||| | Sbjct 72049727 AGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 72049668 Query 34893 ATCTTCTGTTTGACGGATGCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || || | | |||| || || ||| || | || ||||| | Sbjct 72049667 ATTTTGGCTTTGAC--ATCCTCATTGGTGTCACTGGGCTTAACCTCAAGAGTGATGGTCT 72049610 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||||||||||||||| Sbjct 72049609 TGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72049579 >seq98 Length=135778131 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||| | || || | || |||| Sbjct 37173951 CAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATC 37173892 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 37173891 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 37173832 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| || ||||||| | || | |||| || ||| || || | ||| ||||| Sbjct 37173831 TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 37173772 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| |||| ||| ||| |||||||||||||||| || Sbjct 37173771 TTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTT 37173736 >seq223 Length=128539186 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 120278404 ACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 120278463 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | |||||||| | || | || |||||||| Sbjct 120278464 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 120278523 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | || | |||| || |||||| || | ||| ||||| || Sbjct 120278524 ATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTG 120278583 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||||||||| ||||||||||| Sbjct 120278584 CCAGTCAGAGTCTTCACGAAGATCTGCAT 120278612 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 120277930 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120277989 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 120277990 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 120278049 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| ||||| || || || | || | || ||| | Sbjct 120278050 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCCA 120278107 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 120278108 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278156 Score = 107 bits (118), Expect = 1e-18 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || || || || |||| || ||||||| || |||||| Sbjct 110883136 TCTTTCTGGATGTTCTAGTCTGAGAGACTGCGGCCATCCTCTGGCTGTTTGCCCGCAAAT 110883195 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTG-TTTGACGGA 34909 || || | || ||||| || | | ||||||||||| || ||| | |||||| | Sbjct 110883196 ATCAGACACTGGTGGTCAGGCAGGATGCCCTCCTTGTCTTGGAT-TTCGGCTTTGAC--A 110883252 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || | | |||| || ||| || || | ||| ||||| || ||| ||||||| ||| Sbjct 110883253 TTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCCATGAGAGTGTTC 110883312 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 110883313 ACAAAGATCTGCAT 110883326 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 120278176 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 120278235 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||| ||||| || | | || ||||| | || | || ||||| || Sbjct 120278236 AGCTGTTTTCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGG 120278295 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || |||| ||| ||||| | Sbjct 120278296 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCT 120278353 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 120278354 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278384 >seq315 Length=127223203 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| || || | || |||| ||||||||||| || |||||| Sbjct 32668485 TCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCAAAT 32668426 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || ||||| | || | ||||||||| | ||| || ||||| || Sbjct 32668425 ATCAGACACTGTTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGAC--AT 32668368 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || || || |||| ||| ||||| || || ||||| ||||||| Sbjct 32668367 TCTCAGTGGTGTCACTGGGCTTGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 32668308 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 32668307 CAAAGATCTGCAT 32668295 >seq422 Length=24206276 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || ||||| | | |||| |||| |||||| || ||||| Sbjct 21869782 TCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAAT 21869723 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| |||||| | Sbjct 21869722 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTT 21869663 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| || | || || | ||| |||||| |||| ||||| ||||| ||| Sbjct 21869662 TCACTGGTGTCACTGGGATGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACA 21869603 Query 34971 AAGATCTGCAT 34981 |||||||||| Sbjct 21869602 GAGATCTGCAT 21869592 >seq253 Length=75148670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| ||||| ||| Sbjct 15279420 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15279479 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 15279480 AGAGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 15279539 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || || | | || | |||| || ||| || Sbjct 15279540 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15279599 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 15279600 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 15279647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||||||| | || || ||||| ||||| ||||| ||| Sbjct 15288042 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15288101 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 15288102 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGA 15288161 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || || || || || | | || | |||| || ||| || Sbjct 15288162 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15288221 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || || || || |||||||| ||||||||||| || Sbjct 15288222 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15288271 >seq227 Length=108555830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 ||| || ||||| ||||| || || | | |||| |||||||| || || |||||||| Sbjct 57866745 TTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTGCTTGCCAGCAAATAT 57866804 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGC 34912 || || |||||||| | || | ||||| | ||| ||| || ||||| || | Sbjct 57866805 CAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGTCTTGAATTTTGGCTTTGAA--ATTC 57866862 Query 34913 TA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | | || || ||| || || | | | ||||| || |||||||| ||||||||| Sbjct 57866863 TCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTTGCCCGTGAGGGTCTTCACA 57866922 Query 34971 AAGATCTGCATA 34982 |||| ||||||| Sbjct 57866923 AAGAGCTGCATA 57866934 >seq84 Length=50890351 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/109 (78%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 34878 CCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACAT 34935 ||||||||||| ||| || |||||| || || || | |||| || ||| || | Sbjct 17041722 CCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 17041665 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 17041664 CGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 17041616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324625671230112