Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_016447.1 Length=219474 Score E Sequences producing significant alignments: (Bits) Value seq299 98.7 1e-15 >seq299 Length=130588469 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/251 (70%), Gaps = 7/251 (3%) Strand=Plus/Minus Query 197398 CCGCTAAATATCTCAAACGCGACAGATATTGAGAACGTGGCTTGGAACGGCCCTAAAATC 197457 || ||||| |||||| | |||| |||||| | || |||| || || |||| Sbjct 3165355 CCCCTAAACATCTCAGTAGACACAGCGATTGAGCATGTCATCTGGATTGGTCCCAAAAAG 3165296 Query 197458 GCTTTAGCATTTGCCAATCCTAAAGAC---GTTACCATAATGGATAAAAGCTACCAGGGT 197514 ||| | || ||||| ||| ||||| || ||| | |||| ||||||||||| ||| Sbjct 3165295 GCTCTTGCTTTTGCACGTCCCAAAGAACATGTAACCTTTATGGCTAAAAGCTACCGGGGC 3165236 Query 197515 CGTGTCAACATTAGCCA-AACCAACTACTCTTTGTGCATTAGGAACCTGACCGTGAATGA 197573 | | | ||| | |||| | ||||| ||| ||| || || ||||| ||||||| Sbjct 3165235 C--GACTACA-TCGCCAGGGGGAGTTACTCCCTGTCCATCAGCAATCTGACTCTGAATGA 3165179 Query 197574 TGCTGGTTCGTATAAGGCCCAAATTAACAAAAATAATTCCCAAGTCACCACCAAGGAGGA 197633 ||| || || || || ||||| || ||| ||| |||| |||||||||| ||||||| Sbjct 3165178 TGCAGGATCCTACAAAGCCCAGATAAACCAAAGGAATTTTGAAGTCACCACTGAGGAGGA 3165119 Query 197634 ATTTACTCTGT 197644 ||| || |||| Sbjct 3165118 ATTCACCCTGT 3165108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 702171210170560