Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq423 228 1e-54 seq113 111 2e-19 seq240 82.4 9e-11 >seq423 Length=130038232 Score = 228 bits (252), Expect = 1e-54 Identities = 330/460 (72%), Gaps = 8/460 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || | Sbjct 41478083 CAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGG 41478142 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| ||||| | ||||||| | |||||||||| Sbjct 41478143 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA-- 41478200 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA--TAATCAG 37353 | ||||| |||| ||||| |||||| |||| | || | || | | || | || Sbjct 41478201 -TGCCTTCCGCTGCAGCAAAGACTACAACACGT-TCCCCATAGGT-AGCTGATTTGTCCC 41478257 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||||| | | |||||||||||| ||| ||||| || |||||||| || | Sbjct 41478258 CAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCAT 41478317 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | ||| |||| | |||||| |||| |||| ||||| ||| | || |||||||||| Sbjct 41478318 TGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACA 41478377 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 || |||| || || ||||| || || || || || ||| | ||||| | ||||| | | Sbjct 41478378 TTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 41478437 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 ||||| || | ||| | || | |||||| |||| ||||| |||||||| || | Sbjct 41478438 CCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-G 41478496 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||| | ||||||| |||||||| ||| || || Sbjct 41478497 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTC 41478536 Score = 174 bits (192), Expect = 2e-38 Identities = 321/462 (69%), Gaps = 9/462 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| |||| || | Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--CTATAATCAG 37353 | | ||| ||| ||||| ||| ||| |||| || | | | | || | || Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCC-ATGGGTAACGTCTTTGTTCCC 119131711 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || |||| |||| ||||||| || ||||| || |||||||||| || | Sbjct 119131710 AA-TCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCAT 119131653 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||||||| | |||||| ||||| | || | || ||||| || | ||||| | Sbjct 119131652 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTA 119131595 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||||| || || ||||| ||||| || || || ||||| || || | ||| | || Sbjct 119131594 TGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-TA 119131536 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || |||| || | || ||| | | | |||||||| ||||||||||||| ||| Sbjct 119131535 ATCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCT 119131476 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 ||||||||||| |||| ||| |||||||| |||||| ||| Sbjct 119131475 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 119131434 >seq113 Length=139301422 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 97069729 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97069788 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 97069789 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97069848 Query 37318 CTAC 37321 | || Sbjct 97069849 CCAC 97069852 >seq240 Length=107702431 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 97512877 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 97512935 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 97512936 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 97512969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592301962464160