Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq127 86.0 2e-12 >seq127 Length=125710982 Score = 86.0 bits (94), Expect = 2e-12 Identities = 176/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 970 GTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCG-GCTAAGTTTATGATTGATGTGGGT 1028 ||||||| ||| ||||||| ||| || || || || || | |||||||| || Sbjct 85916527 GTTATGGAAGAGTAGCTCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGA 85916468 Query 1029 GCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTTTAGC 1088 |||||||| || ||| ||| | ||| || || ||||||||||| | ||||| ||| || Sbjct 85916467 GCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAACTTTGGC 85916408 Query 1089 ---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTTGTGAAAAG 1145 || ||| ||| | | || |||||| | ||||| ||| | ||||| ||| | Sbjct 85916407 AAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGCGAACGG 85916351 Query 1146 GCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTCTGCA 1205 | ||| |||| || || ||| | | || || || | ||||||||||| | | Sbjct 85916350 ATTTTTTATCCAGAAATAGAAGAAGTTCAAGCTTTGGATGACACCGAAAGGGGTTCAGGA 85916291 Query 1206 GGATTTGGGTCTACCGGAA 1224 || ||||| || || |||| Sbjct 85916290 GGTTTTGGTTCCACTGGAA 85916272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138678299724624