Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_019448.1 Length=139806 Score E Sequences producing significant alignments: (Bits) Value seq657 113 4e-20 >seq657 Length=35860 Score = 113 bits (124), Expect = 4e-20 Identities = 296/444 (67%), Gaps = 12/444 (3%) Strand=Plus/Minus Query 98494 AGGTAGTGGTGCAGTCTACCTTAATATATTCCATAATGATATTTTGGATTTATTAAGTTC 98553 ||| || ||||| | || | | ||| || || ||||| | | ||||| ||| || Sbjct 33431 AGGAAGCGGTGCCGCTTATTTAAGTATTTTTCACTATGATTTGGTCGATTTTTTAGATTG 33372 Query 98554 TAAGAAAATAAATGCTAGTGAATCTGTTAGACTTGATAAACTATCTATAGGTGTTACAAT 98613 ||||||||| ||||| |||| |||| | | | ||||||| ||| | | | Sbjct 33371 TAAGAAAATTAATGCAGATGAAAAATCTAGAATACAGACTTTATCTATTGGTTTAATTGT 33312 Query 98614 ACCTAATAAGTTTATGGAATTAGTTAAAGAAGGTAAACCTTTCTACACGTTTGACACT-- 98671 || |||||||| || |||||| |||||| |||| || || | || || || Sbjct 33311 TCCAGATAAGTTTTTGCAATTAGCCAAAGAAAATAAAGACTTTTATATCTTCGAGCCTAA 33252 Query 98672 TACGATATTAACAAAGTATATGGTAAATATTTAGAT--GAATTAAACATTGATGAGTGGT 98729 ||| || || ||| ||| | ||| ||| || || ||||| ||||||| |||| Sbjct 33251 TACTATTTTTCAAAAATAT----TCAATTTTTTTATCAGATTTAAATTTTGATGAATGGT 33196 Query 98730 ACGAAGAATTATTAAATAATGATAAAAT-TGGTAAAGTAAAACATGATGCTAGAGAAGTC 98788 | || ||||| | | ||| | |||| | | ||| ||| || |||||| | Sbjct 33195 ATGACAAATTAGCAGAAGATGCTGAAATCTTGAAAAAGAAATTATC-TGCTAGGTCTATT 33137 Query 98789 ATGACAGATATTGCTAAAACACAATTAGAATCAGGTTACCCTTATGTATTTTATATTGAT 98848 | || | || ||| |||| || || |||||||| || || |||||| | | ||| ||| Sbjct 33136 TTAACTAAAATAGCTCAAACTCAGTTTGAATCAGGCTATCCATATGTAATATTTATAGAT 33077 Query 98849 AATGCTAAT-GACAATCACCCTCTTAAAAATCTAGGTAAAGTTAAAATGAGTAACTTATG 98907 ||||| ||| |||| | ||| | || || |||| || | ||||||||||| ||||| Sbjct 33076 AATGCCAATAGACAGA-ATCCTTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATG 33018 Query 98908 TACAGAAATTTCACAATTACAAGA 98931 || ||||||| ||| | ||||| Sbjct 33017 CACTGAAATTTTTCAAATTCAAGA 32994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447239996357440