Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq423 116 7e-21 seq240 93.3 8e-14 >seq423 Length=130038232 Score = 116 bits (128), Expect = 7e-21 Identities = 394/598 (66%), Gaps = 23/598 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| |||||| |||||||| || || ||||||| |||| ||| | || Sbjct 41478635 GATATCTGGCAGATGTGTAAGAAGGCGGAAGCTTCCTTCTGGACCTCCGAGGAGGTGGAC 41478576 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 ||| |||||||||| |||| | | || | || || ||| || ||||| | Sbjct 41478575 CTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCCGAGGAGAG-AG-ATTTTATAT 41478518 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | || ||| |||||||| || |||||| ||||| || | || || ||| Sbjct 41478517 CCCATGTTCTGGTTTTCTTTGC-GCAAGTGATGGCATAGTAAATGCAAACTTGGTGGAGC 41478459 Query 25652 GATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 |||| | | ||||| ||| ||| || ||| ||||||| || ||||| || | Sbjct 41478458 GATTTAGCCAAGAAGTTCAG---GTGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTG 41478402 Query 25709 CCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTT-CTGATGACGTACATTACAGAC 25767 |||| ||||| | || |||| ||||| ||| |||| || ||||| | ||| Sbjct 41478401 CCATGGAAAACATACATTCTGGAATGTATAGTTTCCTTACTGAC-ACTTACATAAAAGAT 41478343 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAG 25827 | || || || | || |||||| || || || | |||| | |||| Sbjct 41478342 CCCAAAGAAAGGGAATTTCGCTTCAATGCCATTGAAACGATGCCTTGTGTCAAAAAGAAG 41478283 Query 25828 GCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGT 25886 || |||||| || | ||||| | || | | ||||| | ||| || || | || Sbjct 41478282 GCAGATTGGGCCTTGCACTGGATTGGG-GACAAATCAGCTACCTATGGGGAACGTGTTGT 41478224 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 || ||||||||| | ||| |||||||||| |||| ||||| | || |||||||| Sbjct 41478223 AGTCTTTGCTGCAGCGGAAGGCATCTTTTCT---GGTTATTTTGCATCGATATTCTGGCT 41478167 Query 25947 CAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACG 26005 |||| | | | |||| ||||| || || |||||||| || || |||||||| || | Sbjct 41478166 CAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGATG 41478108 Query 26006 AGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 ||||| | ||| | |||||||| |||||| | | || ||| || | |||||||| Sbjct 41478107 AGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCA---ATCACCTGGTACACAAACC 41478053 >seq240 Length=107702431 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || |||||| ||||| | || |||||| Sbjct 97515108 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 97515049 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || |||||||| || || |||||||| || Sbjct 97515048 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 97514990 Query 26004 CGAGG 26008 |||| Sbjct 97514989 TGAGG 97514985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928821532437760