Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq227 298 6e-76 seq331 190 2e-43 seq71 111 2e-19 seq379 96.9 4e-15 >seq227 Length=108555830 Score = 298 bits (330), Expect = 6e-76 Identities = 661/986 (67%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || | || || ||||| || Sbjct 87505252 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACATCAAACTTATTGGC 87505193 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | || || | ||| || Sbjct 87505192 AAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 87505136 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 87505135 CGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 87505076 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 87505075 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 87505016 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 87505015 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 87504956 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| | |||| || | | || Sbjct 87504955 ATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCGTTCTGTAG 87504896 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || |||||||| || ||||| || || | ||| | Sbjct 87504895 TACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 87504836 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || || | Sbjct 87504835 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAACGAC 87504779 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 87504778 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 87504719 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | || |||| | |||| || |||||||| || || | ||||| Sbjct 87504718 GTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 87504659 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 87504658 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 87504599 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || ||||| || || ||||| || || || || || |||| | | Sbjct 87504598 CATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCTCCAATCG 87504539 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||||||||||| ||| |||||| || |||| |||| ||| | ||| ||| | Sbjct 87504538 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTG-CAGCTAAATAGG 87504480 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | | || | ||| |||||| || | |||||| | ||||||||| ||||||||| Sbjct 87504479 A-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCC 87504421 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| ||| Sbjct 87504420 CTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGGA 87504361 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| || | | | || || || ||||||| ||| || Sbjct 87504360 AACTCTGCCTCTTCTTTACTAAGTGGTTCTACAATATATTTGCGTCTCTTGATGAAAGAA 87504301 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||| || | |||||||| ||||| Sbjct 87504300 GTACAGTCACTGGTCATGTTTATATA 87504275 >seq331 Length=101219884 Score = 190 bits (210), Expect = 2e-43 Identities = 237/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | |||| || ||||| || || || || || |||||||| || Sbjct 68447134 ATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACA 68447193 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| Sbjct 68447194 CATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAG 68447253 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| ||| || ||||| | || ||||| | ||| || | || || || ||||| Sbjct 68447254 TCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTT 68447313 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||||||||||||| ||||||| || ||||| || || | |||||||| || || || Sbjct 68447314 CTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAAT 68447373 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 ||| || || | | | ||||| || ||||| | ||||| ||||||| |||| | || Sbjct 68447374 CAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTC 68447433 Query 168449 TCGCTCATCTTGAGTTACGACCTG 168472 || ||||| || || || || || Sbjct 68447434 TCTTTCATCCTGGGTCACCACTTG 68447457 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 68444590 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 68444646 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| || || ||||| Sbjct 68444647 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 68444706 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | ||| || || || |||| |||||| | | ||||||||||| || Sbjct 68444707 GGGTGAGACTGGGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGATC 68444766 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 || || || || || || || |||||||| || || |||| Sbjct 68444767 ACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 68444806 >seq71 Length=91010382 Score = 111 bits (122), Expect = 2e-19 Identities = 232/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Plus Query 160618 TGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACT 160677 |||| || |||||||| | || | ||||| || | || || | |||| || ||| | Sbjct 22012488 TGACAATTTCTAGGTTGGATTTAATGGGAAAATCCATCCCACAAAGTTTTACCAAGTATT 22012547 Query 160678 TCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGC 160737 |||| || ||| | | |||||| ||||||| || | || ||||| || ||| Sbjct 22012548 TCCAGCCTGCAGTCATTGCTTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCTGGC 22012607 Query 160738 TCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACG 160797 |||| || || || || || |||| | || || |||| ||||| ||| |||||| Sbjct 22012608 TCCATGATGCATAAACCACAGTCTCCAATTAGCTCGCCAGGAAGACTTTACTGAAACAGA 22012667 Query 160798 ACACGATTCCCACCACC---GCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCA 160854 | | || |||| ||| || | |||| | ||| | | | ||| ||||||||| | Sbjct 22012668 ATGCAATGCCCATCACTCCAGCTAAAAAGGA-ATCCTCT--GATTTTTTGTCCACGTGAA 22012724 Query 160855 CGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCT 160914 || ||| | |||||||||| ||||||||||| | | ||| | | ||| || |||| Sbjct 22012725 TGCGATAGAAGTTCTGAGGCATATAGATGGCCCTCGGTAGCCTGTAAAGCATTTCAATCT 22012784 Query 160915 TATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTC 160957 | ||||| | | ||||| || ||| | ||||||| | ||| Sbjct 22012785 TGTGATGAACTGCTATAGAATATGCTGTTTGAAACTCCGCCTC 22012827 Score = 96.9 bits (106), Expect = 4e-15 Identities = 212/316 (67%), Gaps = 5/316 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 22011924 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCAATGTCAAGCTTA 22011983 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| | | || ||||||| || ||| || | || || | | Sbjct 22011984 TTGGCAAATAAGTGGTGTTGGCGC---AGCATCCAGTTCAAGTCACCAGCTCCAAAAATG 22012040 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | |||| | || | ||| | ||||| |||| ||||| | | ||| Sbjct 22012041 CACACCAAGTGATTGTGGTCCCCATCGCA--GTGGGTAGGGAGCACCTTTGGAAGCATCA 22012098 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 22012099 CCCTCCAAGTACTGCCACTTGACAAACCTGGCAACTGCATGCATGTCAGACAAGTCATAC 22012158 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | ||| || || | || |||| ||| | ||| |||| || Sbjct 22012159 TTATGGTTTGTGGAGAGTGAACCAGGGACTTCAGGAATACTCTGGATGGTATCCCAGAGA 22012218 Query 160347 TGTTCGTCGGGGCTGT 160362 || || || ||||||| Sbjct 22012219 TGCTCATCAGGGCTGT 22012234 >seq379 Length=58131712 Score = 96.9 bits (106), Expect = 4e-15 Identities = 197/290 (68%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 23887375 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 23887431 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || |||| | || ||| | || |||||| | || |||| || || Sbjct 23887432 CCCATAAACACAGATAGCCCGCTGGTGGATTCCAGAGCAAGGAGCATAAGGAGCACCCTT 23887491 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 23887492 ATCGATGTCGCCCTCATGATCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 23887551 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 23887552 GATGTCGTACTTGGGGTGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 23887609 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 23887610 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 23887659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577204740659040