Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq98 131 3e-25 seq68 131 3e-25 seq253 122 2e-22 seq227 120 5e-22 seq423 109 1e-18 >seq98 Length=135778131 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 2002804 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 2002745 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 2002744 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 2002685 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 2002684 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 2002625 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 2002624 GGGTTCACCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2002565 >seq68 Length=92142175 Score = 131 bits (144), Expect = 3e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 7889873 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 7889814 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 7889813 GTAGTCAGAAAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 7889754 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 7889753 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 7889694 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||| | || || || | ||||| | ||| ||||||||||| Sbjct 7889693 GGGTTCAACCTCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7889634 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 62819031 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 62818972 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || ||| ||| || |||||||| || ||| || || Sbjct 62818971 GTAGTCAGACAAAGTCCATGCATCTTCCCGTTGCTTGCCAGCAAAGATCCCTCTTTGCTG 62818912 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||||| || || | |||||||| ||| |||||||| Sbjct 62818911 AGCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCTGA 62818852 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || | | ||||| ||||| ||||||||||| Sbjct 62818851 GGGTTCAACATCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 62818792 >seq253 Length=75148670 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| ||||| ||||| | ||||| |||||| |||||| Sbjct 9604684 TTTCTTAGCAGCACCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATT 9604625 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || |||| ||| | || |||| ||| || |||||||| | | |||||| || Sbjct 9604624 GTAGTC----AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGTTCAGTCTCTGCTG 9604569 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 | || || |||||||| ||| | || || || |||||||| ||| ||||| || Sbjct 9604568 ACCGGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGA 9604509 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 9604508 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTT 9604449 >seq227 Length=108555830 Score = 120 bits (132), Expect = 5e-22 Identities = 172/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||| || || | ||| | ||||| ||| || |||||| Sbjct 68205682 TTTCTTAGCACCACCATGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATT 68205741 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 68205742 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 68205801 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGT-TATAGTATCTG 172011 ||||| || |||||||| |||| || || | |||||||| | ||| ||||| | Sbjct 68205802 ATCAGGAGGAATTCCTTCCTTATTCTGGATCTCGGCCTTTACATTTTTATATCGTATCCG 68205861 Query 172012 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 | | ||| | || || || ||||| || || || | ||||| ||||| |||||||||| Sbjct 68205862 AGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTT 68205921 Query 172072 T 172072 | Sbjct 68205922 T 68205922 >seq423 Length=130038232 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 2009496 TTTCTTAGCAACACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTT 2009437 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| |||| |||| ||| | |||||||| || | ||| || || Sbjct 2009436 GCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 2009377 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 2009376 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 2009317 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || || || || | ||| ||||| ||||| ||||||||||| Sbjct 2009316 GGGTTCAACCTCAAGGGTGATCGTCTTCTCCCTTAGGGTTTTCATGAAAATCTGCATTTT 2009257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905113326343200