Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq253 95.1 4e-14 seq632 86.0 2e-11 >seq253 Length=75148670 Score = 95.1 bits (104), Expect = 4e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| ||||| Sbjct 6879603 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCATG 6879544 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| || || || | | ||||| |||| || || ||||| Sbjct 6879543 GAAAAAGAACTCGGTGGGGGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 6879484 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||||||| || ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 6879483 CTCGGGCCCATAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 6879424 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATA 302841 || || || || || ||||||||||| || | | | ||| | ||| |||||| Sbjct 6879423 AATCCGTTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAATA 6879369 >seq632 Length=50224 Score = 86.0 bits (94), Expect = 2e-11 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA-ATTTTGTCT 289079 |||||| | ||| ||||||||| || ||||| ||||| | || ||||| | || | | Sbjct 44487 CTTTTTCCAGCAAGAGCATCAATCTCATCAATAAAAATGATGCAAGGAGATAACTTCT-T 44429 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || | |||| || || || || | ||||||| || ||| |||| || |||| Sbjct 44428 AGCTTTATCAAACAACTCCCTAACTCTTTTAGCTCCAACCCCGACAAACATATCATCAAA 44369 Query 289140 TTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 || | ||| ||| | || | ||||| | ||| || | || || | || || Sbjct 44368 GCTAGCTCCCGATGCTTCTAAAAAAGGAACATTAGATTCACCAGAAACAGCTTTAGCTAG 44309 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CC 289258 ||| || ||||| || || || ||||| | | || |||||| || || | | | || || Sbjct 44308 AAGAGTTTTACCAGTCCCTGGAGGTCCATAAAGTATAACTCCTTTAGGAATTCTAGCTCC 44249 Query 289259 CA--GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 || | ||| |||||| | || ||||||||||| ||||| ||||| || | ||| | Sbjct 44248 CATTGAAGA---ATATTTTTTCGGTCTCTTTAAAAAATCTACTATTTCTTCCAATTCTTC 44192 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | || | ||| || ||||| |||||| Sbjct 44191 TTTCTCTTCTTTTATTCCAGCAACATCTTTAAAAGT 44156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471779809243348