Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_022920.1 Length=139738 Score E Sequences producing significant alignments: (Bits) Value seq657 118 9e-22 >seq657 Length=35860 Score = 118 bits (130), Expect = 9e-22 Identities = 293/440 (67%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 98766 GGTAGTGGTGCTGTTTATCTAAATATATTCCATAATGATATCCTGGATTTATTAAGCTCT 98825 || || ||||| | |||| ||| ||| || || ||||| | | ||||| ||| | | Sbjct 33430 GGAAGCGGTGCCGCTTATTTAAGTATTTTTCACTATGATTTGGTCGATTTTTTAGATTGT 33371 Query 98826 AAGAAAATCAATGCCAGTGAATCTGTTAGACTAGATAAATTATCTATTGGTGTTACAATC 98885 |||||||| ||||| |||| |||| || | | |||||||||||| | | | Sbjct 33370 AAGAAAATTAATGCAGATGAAAAATCTAGAATACAGACTTTATCTATTGGTTTAATTGTT 33311 Query 98886 CCTAACAAATTTATGGAGTTAGTTAAAGAAGGTAAACCTTTCTATACTTTTGATACTTAC 98945 || | || ||| || | |||| |||||| |||| || |||| || || || | Sbjct 33310 CCAGATAAGTTTTTGCAATTAGCCAAAGAAAATAAAGACTTTTATATCTTCGAGCCTAAT 33251 Query 98946 GACATTAATAAAGTGTATGGTAAATATTTAGATGAGCT--AAACATTGATGAATGGTATG 99003 ||| | || ||| | ||| ||| || || | ||| ||||||||||||||| Sbjct 33250 ACTATTTTTCAAAAATAT--TCAATTTTTTTATCAGATTTAAATTTTGATGAATGGTATG 33193 Query 99004 ATAAGTTACTAGATAATGATAGTATCG-GTAAAGTAAAACATGATGCTAGAGAAGTTATG 99062 | || ||| ||| ||| | ||| | ||| ||| || |||||| || | Sbjct 33192 ACAAATTAGCAGAAGATGCTGAAATCTTGAAAAAGAAATTATC-TGCTAGGTCTATTTTA 33134 Query 99063 ACAGATATTGCTAAAACGCAATTAGAATCAGGTTACCCTTATGTATTCTATATTGATAAT 99122 || | || ||| |||| || || |||||||| || || |||||| | | ||| |||||| Sbjct 33133 ACTAAAATAGCTCAAACTCAGTTTGAATCAGGCTATCCATATGTAATATTTATAGATAAT 33074 Query 99123 GCTAATGATAATCACCCATTGAAAAACCTAGGTAAAGTTAAAATGAGTAACTTATGTACA 99182 || ||| | | || || || || |||| || | ||||||||||| ||||| || Sbjct 33073 GCCAATAGACAGAATCCTTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATGCACT 33014 Query 99183 GAAATTTCACAATTACAAGA 99202 ||||||| ||| | ||||| Sbjct 33013 GAAATTTTTCAAATTCAAGA 32994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447022401808320