Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq657 210 7e-49 seq84 84.2 7e-11 >seq657 Length=35860 Score = 210 bits (232), Expect = 7e-49 Identities = 1143/1797 (64%), Gaps = 58/1797 (3%) Strand=Plus/Minus Query 54050 CTTAGAATCTTATGAAGATCGTATTGCTATTGTTTCTTTATTCTTAGGACAAGGTAATTT 54109 ||||||| |||||||||| | | | || ||||||||| ||||| | || |||| Sbjct 33821 CTTAGAAAGTTATGAAGATAGGGTGATTGTTACTTCTTTATTTTTAGGGGATGGGGATTT 33762 Query 54110 CAATAAAGCAAAAAGTTTAGCTGTTTCTATGATTGAACAAAGATACCAACCAGCTACTCC 54169 | ||||| | || ||| || || ||| |||| | || || || ||||| Sbjct 33761 TGAATTAGCAATGAACATATCTGGTTTAATTATTCGTCAAATTTTTCAGCCGGCAACTCC 33702 Query 54170 AACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCTTGTTTCTTATTAGA 54229 |||||| ||||||||| | || ||| ||||||| | ||||| ||||| ||||| || Sbjct 33701 AACTTTTTCAAATGCTGGGAAAAAAAGATCCGGAGAATTAGTTTCATGTTTTTTATTGGA 33642 Query 54230 AATGGATGATAGCTTGAATTCAATTGGTTTC--AATATCAATACTGCAATGCAATTATCT 54287 ||| || ||| | | ||||| || | ||| |||| || | |||||||| || Sbjct 33641 AATAGAAGATTCCATCAATTCTATCAACTATGTAATTTCAA--CTTCTATGCAATTGTCA 33584 Query 54288 AAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGAAAAGAGCAAATT 54347 |||||||| || || || || | || | || ||| | || || ||| || ||| Sbjct 33583 AAAATTGGAGGAGGAGTGGCTATTAATTTATCCAAATTAAGGGGTAGAGGAGCTTCTATT 33524 Query 54348 AAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTTTTAGAAGATAGC 54407 ||| ||||| | | ||||| |||||| |||| ||| | ||| |||| || | Sbjct 33523 AAAAAAATTGACAGTACAGCTTCGGGAGTATTACCTGTTTTAAAAATTTTGGAGAACGTG 33464 Query 54408 TTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTAAACATC 54467 || |||||| |||| | || |||| ||| || || | ||| |||| || Sbjct 33463 TTTGATTATGCCGATCAATTAGGAATGAGAAGAGGAAGCGGTGCCGCTTATTTAAGTATT 33404 Query 54468 TTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGATGAAAAAGCC 54527 || |||| ||| | | || || |||||| ||| || || ||||| ||||||||| | Sbjct 33403 TTTCACTATGATTTGGTCGATTTTTTAGATTGTAAGAAAATTAATGCAGATGAAAAATCT 33344 Query 54528 AGAATTCAATCTTTATCTATTGGATTAATTGCTGAAAAAATCTTCTTCCAATTAGCAAAA 54587 ||||| || ||||||||||||| ||||||| | | | | || || |||||||| ||| Sbjct 33343 AGAATACAGACTTTATCTATTGGTTTAATTGTTCCAGATAAGTTTTTGCAATTAGCCAAA 33284 Query 54588 AGAAACGAAGAAATGTATGTTTTTGCTCCTCACTCGGTTTACAGAGCTTATGGTGAACAT 54647 ||| |||| | ||| | || | ||| | | ||| | ||| | || | Sbjct 33283 GAAAATAAAGACTTTTATATCTTCGAGCCTAATACTATTTTTCAAAAATAT--TCAATTT 33226 Query 54648 TTAGATGACATGGATTTAAATGTT-AT-----GTATGATAAGTTAGTTAAAAACCCAGCT 54701 || || | ||||||||| || || |||||| || |||| || | | | Sbjct 33225 TTTTATCA----GATTTAAATTTTGATGAATGGTATGACAAATTAGCAGAAGATGCTGAA 33170 Query 54702 GTTAAGAAACGTAAGTTAAATTTAACTGCTCGCGAAATGCTTATTAAAATTGCTATTATT 54761 | |||| ||| || ||| ||||| | || | | |||||| ||| | | Sbjct 33169 ATCTTGAAA---AAG---AAATTATCTGCTAGGTCTATTTTAACTAAAATAGCTCAAACT 33116 Query 54762 CAATTAGAATCTGGCTACCCTTATTTTATGTACAAAACTAACGCTAATGATACTCACGCA 54821 || || ||||| ||||| || ||| | || | | | ||| || ||| | || | | Sbjct 33115 CAGTTTGAATCAGGCTATCCATATGTAATATTTATAGATAATGCCAAT-AGACAGAATCC 33057 Query 54822 TTAAAAGATATTGGCCAAG-TTAAAATGAGTAATCTTTGTACGGAAATCTTCCAATTACA 54880 || ||||| ||| | ||| | |||||||||||| | || || ||||| || ||| | || Sbjct 33056 TTTAAAGAAATTAGGAAAGATAAAAATGAGTAATTTATGCACTGAAATTTTTCAAATTCA 32997 Query 54881 AGAGACATCTACTATTAATAACTATGGTACTGATGATGAAATCAAGAGA-GATATCAACT 54939 ||| | || |||| | ||||| || |||||||| |||| | ||| | | Sbjct 32996 AGAAAGCTCGTATATTGCAGATTATGGGGAGGAAGATGAAAT-AAGAAATGATGTATCTT 32938 Query 54940 GTAATTTAGGTTCATTAAATATTGTTAATGTAATGGAA-TTAAAAGCAATTAGAGATTCA 54998 | ||||||| ||| |||||| | || ||||| || ||| | || | |||||| | || Sbjct 32937 GCAATTTAGCTTCTTTAAATTTAGTGAATGTCATTGAAGATGGAA--ATTTAGAG-TACA 32881 Query 54999 --GTTCATGCTGGTGTCGAAGCATTAACATCAGTTTCTGATATTACTTCAATTGAAAATG 55056 ||| | | | ||| |||| | ||| || | ||||||||| | |||| Sbjct 32880 TTGTTGAAATATCTATGAGAGCTTTAAGCGCGGTTAGCGACTTAACTTCAATTAAGAATG 32821 Query 55057 CCCCTACAGTTAAGAAAGCTAATGATGAACTTCACGCTATTGGTTTGGGTTCTATGAACT 55116 | || | ||| ||||||||| | ||| | | || |||| ||||| ||| || | Sbjct 32820 CACCAAGCATTAGAAAAGCTAATCAAGAATATAAATCTGTTGGATTGGG-GGTATTAAAT 32762 Query 55117 TACAC-GGATGGTTAGCTAAAAATAAAATTAATTACGAATCTCCTGAAGCTCTAGATTTC 55175 | || |||| || ||| ||||| || | || | ||||| || | ||||| | Sbjct 32761 TTTACGGGATTTTTGATTAAGAATAATATAGAGTATGGTTCTCCCGAGTCACTAGAAATA 32702 Query 55176 GTTAGAACTTTCTATATGGCAG---TAAACTACTATTCTATTGAGAAAAGTATGATGATC 55232 | | | | ||| | | |||| | || || ||||| || | ||| | ||| Sbjct 32701 GCT---AATGTCTTTTTTGCAGCTATTAATTATTATTCCCTTTTGGCTAGTTCAAAGATA 32645 Query 55233 GCTAAAGAAACTGGGGTTAAGTTTAAAGACTTTGAAAGATCAGAATATGCAAAAGGTACT 55292 |||||||| | || | || ||||| || ||||| | || |||||| || Sbjct 32644 GCTAAAGAGAGAGGAATAAAATTTAAGGATTTTGAGAAGTCTGAATATTATTCCGGAGAA 32585 Query 55293 TATTTTGCTAAATA-TCTTAAAAACGATTACTCTCCTAGAACTGAAAAAATCAAACAAAT 55351 | ||||| ||||| | || | || ||| ||| || ||| | | ||| | | Sbjct 32584 TTTTTTGAAAAATATTGTTCGACTTCCTTTCTC-CCTGAAAGTGATTTAGTTAAAAAGTT 32526 Query 55352 GTTTGATGGAATTGAAATTCCTTCTCAATCAGATTGGGAGAATTT---AATGTTTGATGT 55408 ||| | ||| | | || ||| | ||||||| | ||||| || || | Sbjct 32525 ATTTAAACATATTAAGCTACCATCTATAGAAGATTGGAAAAATTTGAAAAAATTAG---- 32470 Query 55409 TAAGA-AATATGGTTTATACCATGCTTACCGTCTGGCAACAGCACCAACACAAAGTATTT 55467 ||||| || | || || ||| ||||||| ||| | || | ||| || || || || ||| Sbjct 32469 TAAGAGAAAACGGATTGTACAATGCTTATCGTTTAGCTATAGCTCCTACTCAGAGCATTA 32410 Query 55468 CTTATATTCAAAATGCAAC-GC--CAAGTGTTATGCCAATTGTAGATCATATTGAAGCTA 55524 |||| | || ||||| || ||| | ||| ||| | | ||| ||| ||| Sbjct 32409 GTTATTTACAGGGAGCAACTGCCTCAA---TACAGCCTATTATTTCACCTATAGAAACTA 32353 Query 55525 GAACATATGCTAACTCTACAACATACTATCCAATGCCTTATTTGTC-ATTAGATACTTTC 55583 ||| |||| | |||| ||| || | ||||||||||||| | || | | | |||| Sbjct 32352 GAATGTATGGAAGTTCTATAACTTATTTTCCAATGCCTTATCTTTCGAAGCAAAATTTTC 32293 Query 55584 TGGTATTATAAATCAGCATATAATACAAATCAATTTAAATTAATTGACATTATTGCTGAA 55643 | || | ||||||| ||| | | | ||||| || ||||| || || | || Sbjct 32292 AACT-TTTTCAATCAGCCTATCAGATAGATCAAAAAAAGTTAATAGATATGTCTTCTATG 32234 Query 55644 ATGCAAGAACATGTAGACCAAGGTATTAGTACAATTTTATATGTAAATAGCGATATTACC 55703 || || | ||| | |||||||| ||| ||||| | || || | | | || || Sbjct 32233 ATACAGGTTCATATCGACCAAGGAATTTCAACAATACTTTACGTTACAAACAATTCAACT 32174 Query 55704 ACTAGCGAATTAGCTAGATATTATATTTATGCAAGTGAAAAAGGATTAAAGAGTCTTTAC 55763 || || || |||| || | || | || || | | ||||| |||||| ||||| Sbjct 32173 ACAAGAGATTTAGTTAAGTTGTACTTATACGCCCATCACAAAGGGTTAAAGTCCCTTTAT 32114 Query 55764 TACACTAGAACGAATAATTTAGGTGTTAACGAATGTGAGACTTGTTCAGTTTAATTA 55820 || |||||| || |||||| | | |||||| | |||| |||||||||| Sbjct 32113 TATGTTAGAACAAAAAATTTAAACCCTGAAGAATGTAATTTTTGTCAAGTTTAATTA 32057 >seq84 Length=50890351 Score = 84.2 bits (92), Expect = 7e-11 Identities = 228/341 (67%), Gaps = 11/341 (3%) Strand=Plus/Plus Query 188756 AAAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAA 188815 ||||| |||| || | || |||| || ||||| ||||||||||| | | || |||| Sbjct 39567555 AAAAAAGTAATATTTTGCTACTTGGACCAACTGGGTCAGGTAAAACTCTGCTGGCACAAA 39567614 Query 188816 CATTGGCTGATATG-TTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAA 188874 | | ||||| ||| | |||| | | | ||||||| ||| || || | || | Sbjct 39567615 CCCTAGCTGA-ATGCCTTGATGTCCGTTTTGCTATCTGTGAGTGTACAACTATGACTCAC 39567673 Query 188875 GCTGGTTATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCGTTTAATCCAAGCAGCTGA 188933 ||||| || |||| || ||| | ||| || ||||| || |||||| || | Sbjct 39567674 GCTGGATACATAGGCGAGGATATTGAATCTGTGATTGC-CAAACTACTCCAAGATGCCAA 39567732 Query 188934 TTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGC 188993 |||| | | ||| ||| ||| |||||||| | | | |||||||| ||||| |||| Sbjct 39567733 TTACAGTGTGGAAAAAGCACAACAAGGAATTGTCTTTCTGGATGAAGTCGATAAGATTGG 39567792 Query 188994 TAGAAAATCAGAAAGCA--CATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAA 189051 || | | ||| |||| ||| ||| ||||| ||| ||||| || |||||| Sbjct 39567793 CAGTGTGCC---ATGCATTCATCAGTTA--CGAAATGTAGGTGGAGAAGGCGTTCAGCAA 39567847 Query 189052 GCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092 | ||||||||| | | ||||| ||| | | || ||||| Sbjct 39567848 GGCTTATTAAAACTACTAGAAGGCACAATAGTCAATGTTCC 39567888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591869525710592