Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq240 143 2e-29 >seq240 Length=107702431 Score = 143 bits (158), Expect = 2e-29 Identities = 685/1071 (64%), Gaps = 57/1071 (5%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||||| ||| | ||| |||| | || ||| | || | Sbjct 43753539 ATGCCTTCTATGTGGCAGACCTGGGAGACATTCTAAAGAAACATCTGAGGTGGTTAAACG 43753480 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | || | || | || | Sbjct 43753479 CTCTCCCTCGTGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCGTG 43753421 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 43753420 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 43753361 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||||||||| || Sbjct 43753360 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCTTGTAAACAAGTA 43753301 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || | | |||||| ||| | | |||||| | ||||||||||||||||||||| Sbjct 43753300 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 43753241 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || |||| Sbjct 43753240 GAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGCAGATTGCCACT 43753181 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || || || || | | | ||| Sbjct 43753180 GATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTCGGTGCCACGCTCAGAAATAGC 43753121 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | ||| | || ||| ||| | | | || || | || |||||||||||| Sbjct 43753120 AGGCTCCTTTTGGAAAGGGCAAAAGAGGTGAATATCGATGTTGTTGGTGTCAGCTTCCAC 43753061 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || || ||||| | ||| | || | | | | || || |||| || | | Sbjct 43753060 GTAGGAAGCGGCTGTACCGATCCTGAGACCTTCGTGCAGGCAATCTCTGATACCCGCTGT 43753001 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || ||||| | || || |||||| || | |||||||| || | Sbjct 43753000 GTTTTTGAGATGGG--GGCTGAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTG 43752943 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACAT-TGCAGAAGTCATT 20857 ||||| || ||||| |||| || ||| | ||||| || || ||| | | || Sbjct 43752942 GCTTT-CCTGGATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCA-TAATC 43752887 Query 20858 AACGCGGCCTTGGAAAGGCATTTTC---CAGATGATGCCAACCTGACAATTATTGGTGAA 20914 ||| | || ||||| || |||||| |||| || ||| ||| || | | | Sbjct 43752886 AACCCAGCATTGGACAGATATTTTCTGTCAGACTCTG---GAGTGAGAATCATAGCTAAG 43752830 Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAA 20972 |||||||| ||||| | | | || || | || | || || | | | || | | ||| Sbjct 43752829 CCTGGCAGATACTATGTTGCATCAGCTTTCACACTTGCGGTTAATATCATCTCCAAGAAA 43752770 Query 20973 AGTGTGTTGAAG--ACA------CTC-----CTGGAGA---------TAAAAAG---TTT 21007 | ||| || ||| ||| ||| || ||| | || || ||| Sbjct 43752769 ATTGTATTAAAGGAACAGACTGGCTCTGATGATGAAGATGAGTCGAGTGAACAGACCTTT 43752710 Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067 ||||||||||| ||||||||||||||||| ||||| |||||| | | | | |||| Sbjct 43752709 ATGTATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTGTATGATCATGTA 43752650 Query 21068 CGTCCTATGCCTATGCTGCTTAAAGAAAAACGCCTTGA--AGACA--AAG-ACTATGTTT 21122 | | | ||| | |||| ||||| | ||| | ||| | ||| | ||| | Sbjct 43752649 CATGTAAAGCCCCTTCTGC-AAAAGAGA----CCTAAACCAGATAAGAAGTATTATTCAT 43752595 Query 21123 CTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGC 21182 ||||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| |||| Sbjct 43752594 CTAGCATATGGGGACCAATATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTGC 43752535 Query 21183 CAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 | | | || ||||| || ||| | | |||||||||||||||||||||| Sbjct 43752534 CCAAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA 43752484 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 97180955 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 97181014 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | ||||||||||||||||| |||| || | Sbjct 97181015 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCCTACA-CTGTTGC 97181073 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 97181074 TGCTGCCTCTACATTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 97181129 Score = 82.4 bits (90), Expect = 7e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 97178289 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 97178348 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 97178349 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 97178408 Query 20492 GATAGTGAAG 20501 |||||||||| Sbjct 97178409 GATAGTGAAG 97178418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463533988182720