Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq270 105 9e-18 seq223 105 9e-18 seq299 104 3e-17 seq253 104 3e-17 seq201 96.9 5e-15 >seq270 Length=71996105 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 44945785 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 44945844 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 44945845 CCCCGACGGGGAG 44945857 Score = 105 bits (116), Expect = 9e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 45018753 TTCTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 45018694 Query 8714 ATTCCCCGACGAGGAG 8729 ||||||||||| |||| Sbjct 45018693 ATTCCCCGACGGGGAG 45018678 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 44945786 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 44945845 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 44945846 CCCGACGGGGAG 44945857 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 45018749 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 45018690 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 45018689 CCCGACGGGGAG 45018678 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| || Sbjct 45040130 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGGTT 45040071 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 45040070 CCCCGACGGGGAG 45040058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 44945857 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 44945798 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 44945797 TACTAACGAGGA 44945786 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 45018678 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 45018737 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 45018738 TACTAACGAGGA 45018749 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| ||| Sbjct 45040129 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGGTTC 45040070 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 45040069 CCCGACGGGGAG 45040058 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| ||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 45040058 CTCCCCGTCGGGGAACCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 45040117 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 45040118 TACTAACGAGGA 45040129 >seq223 Length=128539186 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 91406399 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 91406458 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 91406459 CCCCGACGGGGAG 91406471 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 93809771 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 93809830 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 93809831 CCCGACGGGGAG 93809842 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 120291568 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 120291509 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 120291508 CCCCGACGGGGAGG 120291495 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 120291567 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 120291508 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 120291507 CCCGACGGGGAG 120291496 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 120296221 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 120296162 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 120296161 CCCCGACGGGGAGG 120296148 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 120296220 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 120296161 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 120296160 CCCGACGGGGAG 120296149 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 91406400 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 91406459 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 91406460 CCCGACGGGGAGG 91406472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 93809767 CCACTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCA 93809826 Query 11785 ATTCCCCGACGAGGAG 11800 ||||||||||| |||| Sbjct 93809827 ATTCCCCGACGGGGAG 93809842 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 91406471 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 91406412 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 91406411 TACTAACGAGGA 91406400 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 93809842 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 93809783 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 93809782 TACTAACGAGGA 93809771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 120291496 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120291555 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 120291556 TACTAACGAGGA 120291567 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 120296149 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120296208 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 120296209 TACTAACGAGGA 120296220 >seq299 Length=130588469 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2485661 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2485602 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 2485601 CCCGACGGGGAG 2485590 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2539546 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2539605 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 2539606 CCCCGACGGGGAGG 2539619 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2539547 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2539606 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 2539607 CCCGACGGGGAG 2539618 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2485662 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2485603 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 2485602 CCCCGACGGGGAG 2485590 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2485590 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2485649 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2485650 TACTAACGAGGA 2485661 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2539618 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2539559 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2539558 TACTAACGAGGA 2539547 >seq253 Length=75148670 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 7592113 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 7592054 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 7592053 CCCGACGGGGAGAAG 7592039 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 7592116 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 7592057 Query 11786 TTCCCCGACGAGGAG 11800 |||||||||| |||| Sbjct 7592056 TTCCCCGACGGGGAG 7592042 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 7592042 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7592101 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 7592102 TACTAACGAGGA 7592113 >seq201 Length=128595539 Score = 96.9 bits (106), Expect = 5e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | | ||||||||||||||||||| Sbjct 31627428 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTTCGATTC 31627487 Query 8718 CCCGACGAGGA 8728 ||||||| ||| Sbjct 31627488 CCCGACGGGGA 31627498 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | | |||||||||||||||||| Sbjct 31627427 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCAGGAGACCGGGGTTCGATT 31627486 Query 11788 CCCCGACGAGGA 11799 |||||||| ||| Sbjct 31627487 CCCCGACGGGGA 31627498 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 139354 TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTAT 139413 ||| ||||||||| |||||||||||||||| | | |||| |||||||| | |||||||| Sbjct 31627498 TCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTAT 31627439 Query 139414 ACTAACGAGGA 139424 ||||||||||| Sbjct 31627438 ACTAACGAGGA 31627428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652828446237760