Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq223 152 5e-32 seq253 127 2e-24 seq247 123 2e-23 seq98 104 2e-17 seq373 100 3e-16 seq422 93.3 4e-14 seq315 91.5 1e-13 seq227 89.7 5e-13 seq68 82.4 7e-11 >seq223 Length=128539186 Score = 152 bits (168), Expect = 5e-32 Identities = 154/198 (78%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 120277960 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 120278018 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 120278019 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 120278078 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 120278079 GACATTCTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 120278138 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 120278139 CTTCACGAAGATCTGCAT 120278156 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| || ||||| || || ||| | || || ||| Sbjct 120278407 AAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGC 120278466 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || |||| ||||||||||||||| |||||||||||||| |||| Sbjct 120278467 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATC 120278526 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||||| | || | ||||| ||||||| || || | ||||| ||| ||||| Sbjct 120278527 TTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCA 120278586 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || ||||| |||||||| Sbjct 120278587 GTCAGAGTCTTCACGAAGATCTGCAT 120278612 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 120278187 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTTCC 120278246 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||| ||||| ||||||||||||||||| || ||||||| ||| Sbjct 120278247 AGCAAAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTTGCCTT 120278306 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| |||| ||||| ||| ||||| ||||| || Sbjct 120278307 GACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 120278366 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 120278367 CTTCACGAAGATCTGCAT 120278384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || || || | || | | | ||||| |||| |||| Sbjct 110883129 GGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGCGGCCA-TCCTCTGGCTGTTTGC 110883187 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 |||| | || || | ||| ||||| || ||||||| |||||||| ||| || || Sbjct 110883188 CCGCAAATATCAGACACTGGTGGTCAGGCAGGATGCCCTCCTTGTCTTGGAT-TTCGGCT 110883246 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| |||||||||| || | ||||| ||| ||||| | ||| Sbjct 110883247 TTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCCATGAGA 110883306 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 110883307 GTGTTCACAAAGATCTGCAT 110883326 >seq253 Length=75148670 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 15279449 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 15279507 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | ||||||| ||||||||| || ||||||||||| || || |||||| || Sbjct 15279508 CCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 15279567 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 15279568 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 15279627 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 15279628 TCTTCACGAAGATCTGCAT 15279646 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | ||| | | | || || || Sbjct 15288063 AAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAG 15288121 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| |||||||||||| || ||||||||||| || ||| Sbjct 15288122 CTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGAT 15288181 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | || | ||||| |||||||||| || | ||||| ||| ||||| Sbjct 15288182 TTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCC 15288241 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || ||||| |||||||| Sbjct 15288242 GGTCAGGGTCTTCACGAAGATCTGCAT 15288268 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || |||||||| || |||||||| || ||| | || || || Sbjct 9604653 AAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAAAGTACGTCCA----TCTTCCAGT 9604598 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | | || | |||||| ||||||| || |||||||| | |||| Sbjct 9604597 TGCTTGCCAGCAAAGTTCAGTCTCTGCTGACCGGGAGGAATTCCTTCCTTAACCTGGATC 9604538 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | | | ||| || | ||| || || |||| ||||| ||| || || Sbjct 9604537 TTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCT 9604478 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||||||||| Sbjct 9604477 GTAAGGGTTTTCACGAAAATCTGCAT 9604452 >seq247 Length=91754291 Score = 123 bits (136), Expect = 2e-23 Identities = 151/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 30514645 GGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 30514703 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || | || || ||||||||||| || ||||| || |||||||| ||| ||| || Sbjct 30514704 CGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATTTTGGCT 30514762 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| ||||||| || |||| ||||| ||||||||| || || Sbjct 30514763 TTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTTTGCCCGTGAGG 30514822 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 30514823 GTCTTCACAAAGATCTGCATG 30514843 >seq98 Length=135778131 Score = 104 bits (114), Expect = 2e-17 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| | | ||| | | | || || ||||| ||||| Sbjct 37173935 GTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGCC 37173877 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || || ||||||||||| || ||||| || |||||||| ||| ||| || | Sbjct 37173876 GGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATTTTGGCTT 37173818 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||||||||| | || | Sbjct 37173817 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGGGAGGG 37173758 Query 133642 TTTTTACGAAAATCTGCATG 133661 | | || || ||||||||| Sbjct 37173757 TCGTCACAAAGATCTGCATG 37173738 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || || || |||||||| Sbjct 2002764 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 2002706 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 2002705 AGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 2002646 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||| || | ||| || | |||| ||||| ||| || || || || || Sbjct 2002645 TACATTTTCTATCGTATCCGAGGGTTCACCCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 2002586 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 2002585 TTTCACGAAAATCTGCAT 2002568 >seq373 Length=85787240 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||| || | ||| | | | || || |||||| ||| Sbjct 11745807 GGTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCATGC 11745749 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||||||| || ||| || || Sbjct 11745748 CTGCAAAGATGAGCCTCTGCTGGTCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCT 11745689 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||| | ||||| | Sbjct 11745688 TCACATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGG 11745629 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| | |||||| Sbjct 11745628 TCTTCACGAAGACCTGCAT 11745610 >seq422 Length=24206276 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || ||||| | ||| | | | ||||| | ||| |||| Sbjct 21869789 GGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCA-TCCTCCAACTGTTTGC 21869731 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || | | || || |||||||||| || |||||||| |||||||| |||||| | Sbjct 21869730 CCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATGGATCTTGGCTT 21869671 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| ||||| |||| | || || | ||||| |||| | || || || | Sbjct 21869670 TGACATTTTCACTGGTGTCACTGGGATGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGG 21869611 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | ||||| | ||||||||| || Sbjct 21869610 TCTTTACAGAGATCTGCATGTCT 21869588 >seq315 Length=127223203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||||| || ||| | || | ||| | | | ||||| ||||| ||||| Sbjct 32668490 TGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCA-TCCTCCAGCTGTTTGCCT 32668432 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTT 133582 || | || || | ||| ||||| | |||||||| |||||| | ||| ||| | ||| Sbjct 32668431 GCAAATATCAGACACTGTTGGTCAAGTGGGATGCCCTCCTTGGC-TTGAATTTTGGCCTT 32668373 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| |||||| || |||| ||||| ||| ||||| || || || Sbjct 32668372 GACATTCTCAGTGGTGTCACTGGGCTTGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 32668313 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 32668312 CTTCACAAAGATCTGCAT 32668295 >seq227 Length=108555830 Score = 89.7 bits (98), Expect = 5e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||| || || ||||| || | ||| | ||||| ||||||||||| Sbjct 57866736 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTGCTTGCC 57866795 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || || ||||||||||| || ||||| || || | ||| ||| ||| || | Sbjct 57866796 AGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGTC-TTGAATTTTGGCTT 57866854 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| |||| ||||||| || || | | ||| ||| ||||| || || | Sbjct 57866855 TGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTTGCCCGTGAGGG 57866914 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || | |||||| ||| Sbjct 57866915 TCTTCACAAAGAGCTGCATAGCT 57866937 >seq68 Length=92142175 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || | ||||| || ||||| || |||||||| Sbjct 7889791 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 7889732 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||| || | ||| || || |||| ||||| | Sbjct 7889731 TCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATG 7889672 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || ||||| |||||||||||||| Sbjct 7889671 ATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7889637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483408690308960