Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq227 217 2e-51 seq331 199 5e-46 seq233 150 2e-31 >seq227 Length=108555830 Score = 217 bits (240), Expect = 2e-51 Identities = 608/924 (66%), Gaps = 17/924 (2%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | | || ||| || | |||||||| || || | ||| ||| |||| ||| Sbjct 87505260 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACATCAAAC 87505201 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | ||| || Sbjct 87505200 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 87505144 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| || || ||| || || || |||| || | | ||| Sbjct 87505143 ATGCACACCGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACA 87505084 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||||||||||| || ||||| | | || |||||||| || ||| Sbjct 87505083 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 87505024 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | | || || || | || | ||||| | || ||||| Sbjct 87505023 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 87504965 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | | ||||||||| |||| || |||| Sbjct 87504964 GAGATACTCATCAGGGCTGTATGTGTCTTGTGCCCACTCCATAAACTTTTGGA---TTTT 87504908 Query 162426 ATCGTA---TAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482 |||| ||| | || || || ||| | || | |||||| || || ||||| Sbjct 87504907 TTCGTTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGA 87504848 Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542 ||| | ||| | | ||||| || |||| | || ||||| | | |||| Sbjct 87504847 AAAAAGAGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCC 87504788 Query 162543 CTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGG 162601 | |||||| | | | ||| ||||||| | |||| ||| | | | || | Sbjct 87504787 ATTAACGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCG 87504729 Query 162602 TCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCT 162661 | || || ||||| ||| || ||| |||| | || || ||||| ||||| | Sbjct 87504728 TTTCCAGGCTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTT 87504669 Query 162662 TAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGT 162721 ||| ||||| || | || || ||||| || | || ||||| || | || | | | | Sbjct 87504668 TAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCAT 87504609 Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 | || |||| | ||||| || || ||||| || |||||||| || || || || || | Sbjct 87504608 AGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACAC 87504549 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 ||||||| | |||| ||||||||||| |||||| ||| | || |||||||| || Sbjct 87504548 TCTCCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTGCAG 87504489 Query 162842 GTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 | | | ||| || | ||| | || || || | ||| || | ||||||||| Sbjct 87504488 CTAAATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCAT 87504431 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 |||||||||||||| | || || | ||| || ||||| || || ||||| |||||||| Sbjct 87504430 ATAGATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATA 87504371 Query 162960 CGCTATGGGGAACTCAGCCTCCTC 162983 ||||| || ||||| ||||| || Sbjct 87504370 TGCTATTGGAAACTCTGCCTCTTC 87504347 >seq331 Length=101219884 Score = 199 bits (220), Expect = 5e-46 Identities = 239/325 (74%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||| ||||| || | || Sbjct 68447133 CATAGACCGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGAC 68447192 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| || Sbjct 68447193 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 68447252 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 68447253 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 68447312 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 68447313 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 68447372 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | | |||| |||||||||||||| |||||||| |||| || | Sbjct 68447373 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 68447432 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 68447433 CTCTTTCATCCTGGGTCACCACTTG 68447457 Score = 120 bits (132), Expect = 4e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 68444590 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 68444646 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| || || || ||||| |||||||| || ||||| || Sbjct 68444647 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 68444706 Query 171626 CGATGTAGAACGGTTTTA-GTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || | ||||||||||| | || || | | || ||||| || || Sbjct 68444707 GGGTG-AGACTGGGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGAT 68444765 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || || ||||| | ||||| ||||||||||| ||||||| Sbjct 68444766 CACGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 68444806 >seq233 Length=98384682 Score = 150 bits (166), Expect = 2e-31 Identities = 438/663 (66%), Gaps = 15/663 (2%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| |||||| | | |||||| |||| | || || | | | Sbjct 21163335 TCCAGTTAAAGTAACTAAGATATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 21163276 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | ||||| Sbjct 21163275 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 21163216 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || ||||| |||| ||| || || | ||||| | || |||| || || Sbjct 21163215 TCTCATAGTTTTCTCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 21163156 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 21163155 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 21163096 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 21163095 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 21163038 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 21163037 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 21162979 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 21162978 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 21162924 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 21162923 TTCAAACACAAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 21162864 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 |||||| | || || | || || || || | || || || || | ||| ||| | Sbjct 21162863 GTCGCGGCGATAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTGAGGAG- 21162805 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || || |||||||| ||||| || || |||| ||| || | || | Sbjct 21162804 TGTGAGTTGGTGACTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCT 21162745 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | | |||| ||| || |||| ||| || | | || |||| || || Sbjct 21162744 GAGGTAAATTTGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGGGATT 21162685 Query 177541 TGT 177543 ||| Sbjct 21162684 TGT 21162682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578417510278400