Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq98 120 7e-22 seq68 114 3e-20 seq227 102 2e-16 seq253 100 7e-16 seq223 95.1 3e-14 seq11 93.3 1e-13 seq423 91.5 3e-13 seq315 84.2 5e-11 seq247 84.2 5e-11 >seq98 Length=135778131 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || | ||| || || || | ||| Sbjct 2002583 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGGTGAACCCTCGGATACGATAGAAAAT 2002642 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 2002643 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 2002702 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 2002703 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 2002762 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 2002763 ACTCTTCATCTTGTGTTGAGACTTCG 2002788 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 2002788 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 2002729 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 2002728 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 2002684 >seq68 Length=92142175 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || | ||||| | || || ||| || || || | ||| Sbjct 7889652 AAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCCTCGGATACGATAGAAAAT 7889711 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 7889712 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 7889771 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||||| | || ||||| | || || |||||| Sbjct 7889772 GCTGGCAAGCAACTGGAAGATGGACGTACTTTTTCTGACTACAATATTCAAAAGGAGTCT 7889831 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 7889832 ACTCTTCATCTTGTGTTGAGACTTCG 7889857 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||| Sbjct 7889857 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAAAAAGTA 7889798 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 7889797 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 7889753 Score = 98.7 bits (108), Expect = 2e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||| Sbjct 62819015 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTC 62818956 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | | |||||||| | ||||| || || ||||| Sbjct 62818955 CATGCATCTTCCCGTTGCTTGCCAGCAAAGAT 62818924 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || | || || || ||||| | || || ||| || || || | ||| Sbjct 62818810 AAAACCCTTATGGGGAAGACCATCACCCTCGATGTTGAACCCTCAGATACGATAGAAAAT 62818869 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || | |||||| ||||| Sbjct 62818870 GTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGAGGGATCTTT 62818929 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| | |||||||| | || ||||| | || || |||||| Sbjct 62818930 GCTGGCAAGCAACGGGAAGATGCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCT 62818989 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 62818990 ACTCTTCATCTTGTGTTGAGACTTCG 62819015 >seq227 Length=108555830 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || |||||||||||||| || || | ||| ||||||| |||||| | Sbjct 68205699 GAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTAC 68205758 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 68205759 GTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 68205802 Score = 100 bits (110), Expect = 7e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206259 TCAAGAAAAAG-AAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 || |||| ||| |||||||| || || |||||||| ||||| || || ||||| Sbjct 68205830 TCCAGAATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAGCAAC 68205771 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 ||||||||||| | |||||| | || ||||| | || || |||||||||||||| || | Sbjct 68205770 TGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTCATCTCG 68205711 Query 206378 TTTTGAGACTTC 206389 | |||||||||| Sbjct 68205710 TGTTGAGACTTC 68205699 >seq253 Length=75148670 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| || || || | || Sbjct 9604467 AAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATATAAAAT 9604526 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTT-TGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||| || | || ||||||||| | |||| | || ||||| | ||| Sbjct 9604527 GTAAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCCGGTCAG-CAGAGACTGAACTT 9604585 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| | ||||| || ||||| | || |||||||| Sbjct 9604586 TGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAATATTCAAAAAGAGTC 9604641 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| |||| ||||||||||| Sbjct 9604642 TACTCTTCATTTTGTATTGAGACTTCG 9604668 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| |||| ||||||||||||||||| || | ||| |||| |||||| Sbjct 9604668 CGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGT----CAAAGTA 9604613 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAG 204841 | |||||||||||| ||||| || || ||| Sbjct 9604612 CGTCCATCTTCCAGTTGCTTGCCAGCAAAG 9604583 >seq223 Length=128539186 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 206229 TGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 |||||| ||||| || ||| |||||| || || || ||||| ||| || ||| Sbjct 120278553 TGACACCATCGAAAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 120278494 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 || || || ||||| |||||||||||| |||||||||| | || || | || ||||| Sbjct 120278493 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 120278434 Query 206349 CGTCCAGAAAGAGTCTACTCTTCAC 206373 | ||||||||||||| || || ||| Sbjct 120278433 CATCCAGAAAGAGTCCACCCTGCAC 120278409 >seq11 Length=90373283 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/206 (69%), Gaps = 11/206 (5%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| | ||||| ||| Sbjct 26593219 AAAACCCTTACAGGGAAGACCATCACCCTTGAGGTTGAACCCTTGAACACAACAGAAAAT 26593160 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||||||| || || |||||||| ||||| Sbjct 26593159 GTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 26593100 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||| | ||||||||| | || || |||||| Sbjct 26593099 GCTGGCAAGCAACTGGAAGATGT-----------CTGATTACAACATTCAAAAGGAGTCT 26593051 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 26593050 ACTCTTCATCTTGTGTTGAGACTTCG 26593025 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTT---TGGAAGTGGAAAGTTCTGACACAGTCGAA 206241 ||||| || ||||| || || |||||| | || || ||| | || ||| ||| Sbjct 46581355 AAAACCCTTACAGGGAAGACCATCACTGACCTCGAGGTTGAACCCTTAGATACAACAGAA 46581414 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 |||||| ||||| || || || ||||||||| || || | |||||||| | Sbjct 46581415 AATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGGCAAAGACTCCTT 46581474 Query 206302 TTCGCCGG--AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 || || | |||||| |||| |||||| | |||||| | || |||| | | || || | Sbjct 46581475 TT-GCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA-CATTCAAAAGG 46581532 Query 206360 AGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||| ||||| |||| |||||| Sbjct 46581533 AGTCTACTCTTCATCTTGTGTTGACACTTCG 46581563 >seq423 Length=130038232 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 5225407 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 5225466 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | |||| ||||||||||| |||||| | ||||||||| || ||||||| Sbjct 5225467 GCTGTCGAGCAACTGGAAGATGGACATACTTTGTCTGATTACAACACTCAAGAAGAGTCC 5225526 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 5225527 ACTCTTCATCATGTGTTGAGATTTC 5225551 >seq315 Length=127223203 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||| || || | || ||||| ||||| Sbjct 125319079 GTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATGAGCAGAGACTGATCTTT 125319138 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || || | || |||||| | | || ||| | Sbjct 125319139 GCTGGCAAGCAACTGGAAGATGGATGTAC--TGTCTGACTACAACATTCGAAAGGAGCCC 125319196 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| || ||||||| Sbjct 125319197 ACTCTTCATCTTGTGTTAAGACTTC 125319221 >seq247 Length=91754291 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| ||||| | || || || |||| Sbjct 30514839 CAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTCGAGGTCGAGCCCAGTGAC 30514780 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| |||||||| || || || || || ||| || Sbjct 30514779 ACCATTGAGAATGTCAAAGCCAAA-ATTCAAGACAAGGAGGGTATCCCACCTGACCAGCA 30514721 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || || || ||||| || ||| |||||||||| | ||| | | || |||||| | Sbjct 30514720 GCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAACAT 30514661 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||| || || ||||| || ||| | || ||| Sbjct 30514660 CCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGA 30514621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181790455273684