Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_025416.1 Length=141907 Score E Sequences producing significant alignments: (Bits) Value seq657 118 1e-21 >seq657 Length=35860 Score = 118 bits (130), Expect = 1e-21 Identities = 298/452 (66%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 100496 GGAGTTAGACAAGGTAGTGGTGCAGTATATCTTAATATCTTCCATAATGATATCTTAGAT 100555 ||| | ||| ||| || ||||| | ||| | | ||| || || ||||| | | ||| Sbjct 33442 GGAATGAGAAGAGGAAGCGGTGCCGCTTATTTAAGTATTTTTCACTATGATTTGGTCGAT 33383 Query 100556 TTATTGAGTTCTAAGAAAATTAATGCTAGTGAATCAGTTAGACTAGATAAATTGTCTATT 100615 || || || ||||||||||||||| |||| | |||| || | | || |||||| Sbjct 33382 TTTTTAGATTGTAAGAAAATTAATGCAGATGAAAAATCTAGAATACAGACTTTATCTATT 33323 Query 100616 GGTGTTACAATACCTAATAAGTTTATGGAATTAGTTAAAGAAGGTAAACCTTTCTACACG 100675 ||| | | | || |||||||| || |||||| |||||| |||| || || | Sbjct 33322 GGTTTAATTGTTCCAGATAAGTTTTTGCAATTAGCCAAAGAAAATAAAGACTTTTATATC 33263 Query 100676 TTTGACACTTATGATATTAACAAAGTATATGGTAAATATTTAGAT--GAATTAAATATTG 100733 || || || || |||| || |||| | ||| ||| || || |||||| ||| Sbjct 33262 TTCGAGCCTAATACTATTTTTCAAAAATAT--TCAATTTTTTTATCAGATTTAAATTTTG 33205 Query 100734 ATGAGTGGTATGAGGAGCTACTAAATAATGATAAGAT-TGGTAAAGTAAAACATGATGCT 100792 |||| |||||||| | || | | ||| | | || | | ||| ||| || |||| Sbjct 33204 ATGAATGGTATGACAAATTAGCAGAAGATGCTGAAATCTTGAAAAAGAAATTAT-CTGCT 33146 Query 100793 AGAGAAGTCATGACAGACATTGCTAAAACACAATTAGAATCAGGTTACCCTTATGTATTC 100852 || | | || | || ||| |||| || || |||||||| || || |||||| | Sbjct 33145 AGGTCTATTTTAACTAAAATAGCTCAAACTCAGTTTGAATCAGGCTATCCATATGTAATA 33086 Query 100853 TATATTGATAATNNNNNNNNNNATCACCCTCTTAAAAATCTAGGTAAGGTTAAAATGAGT 100912 | ||| |||||| | | ||| | || || |||| ||| | ||||||||| Sbjct 33085 TTTATAGATAATGCCAATAGACAGAATCCTTTAAAGAAATTAGGAAAGATAAAAATGAGT 33026 Query 100913 AACTTATGTACAGAAATTTCACAATTACAAGA 100944 || ||||| || ||||||| ||| | ||||| Sbjct 33025 AATTTATGCACTGAAATTTTTCAAATTCAAGA 32994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 453963027941280